Basic Information

Insect: Papilio machaon
Gene Symbol: -
Assembly: GCA_001298355.1
Location: NW:517690-519695[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.1 1.7e+02 2.6 6.9 2 23 210 232 209 232 0.91

2 10 0.00014 0.0076 16.3 1.1 1 23 238 260 238 260 0.98

3 10 0.4 21 5.4 6.8 1 23 266 289 266 289 0.94

4 10 0.051 2.7 8.2 1.3 3 21 297 315 295 316 0.90

5 10 0.00077 0.041 14.0 9.3 2 23 338 359 337 359 0.96

6 10 4.5e-06 0.00024 21.0 2.4 1 23 366 388 366 388 0.98

7 10 4.4e-05 0.0024 17.9 0.3 1 23 394 416 394 416 0.97

8 10 5.2e-06 0.00028 20.8 2.1 1 23 422 444 422 444 0.96

9 10 1.2e-05 0.00065 19.7 4.6 1 23 450 472 450 472 0.99

10 10 5.8e-05 0.0031 17.5 2.8 1 23 478 501 478 501 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.1	1.7e+02	2.6	6.9	2	23	210	232	209	232	0.91
2	10	0.00014	0.0076	16.3	1.1	1	23	238	260	238	260	0.98
3	10	0.4	21	5.4	6.8	1	23	266	289	266	289	0.94
4	10	0.051	2.7	8.2	1.3	3	21	297	315	295	316	0.90
5	10	0.00077	0.041	14.0	9.3	2	23	338	359	337	359	0.96
6	10	4.5e-06	0.00024	21.0	2.4	1	23	366	388	366	388	0.98
7	10	4.4e-05	0.0024	17.9	0.3	1	23	394	416	394	416	0.97
8	10	5.2e-06	0.00028	20.8	2.1	1	23	422	444	422	444	0.96
9	10	1.2e-05	0.00065	19.7	4.6	1	23	450	472	450	472	0.99
10	10	5.8e-05	0.0031	17.5	2.8	1	23	478	501	478	501	0.97

Sequence Information

Coding Sequence: ATGACCAAAGTTGATAAATATTGTCGGTTGTGCGCCGAACTAACTGAAGATTTAATATATGCTGATGAAGAAGCAGCTTTTAATTCAAAGATTGCAAAGAAGATGCTGTGGATAAATATCGACGTTTCTCCTTCAAATAAGCTCCCTAAAAGTATATGCTATTCTTGTTTTGATCAATTAGAACGGACTTGGATTTTTCTCAAGAACGTCAGAGAGGCGCAGGAAAAATTGAATCAATTATTTTCTACGAACAGTGaacataaagttaaattaggAAAGCAGTCATCCGATGTGGCCAACCCCGTCGATATGAACTGGGATGATTTTCAGGATGTTAAAGTTGATATAAAAGATGAAGACATTATGACTGTGATcactacaaataaatttattgaggGTCTAGAGAATTTAAAAACGGAACAGTGTCCTGAAAACGACCAGGATTTTGTGATTGAAGACAATGGGTTCAGTAGTAGCACAGATAGTGAGCAGCCCTCTGATGTCACAGTCAAAAAGAAAAGAAGTAAGAAGAAAGTGTCTCAACATGATAAGCACGAAgacaaaactttatatatagaACCTATTGACATAGCTGACTTGGATGTGACATGGGAGGAGGAGGCATGCCGCTGTGCACACTGTGACGCCCAGTGCAAAAACATCTCATTGTTAAGGTTACATTCCCAACATATACATAACAGTTgttgcatttttaaatgtgtgaGCTGCGGCAAAGTTGTTTCCAATTACAAATCATTTGTCAAACATCTGAGACTGCACAAGGAAAAGCTGAATTATTGCTGTGAATACTGTGACCAAAAGTTTACAatgacaaaatttattaaaagacatAAACATGTTGAGCatggcagtggaaacttaaCTTGTTGTAGGAAATGTGGCATGATATTTGACACAGTGGAGCAGTTACATGACCATTTAgagaaatacaataaaagtattaagaaaatgtttaggAAAGCCATTGACAATGTGGAGGAGCAAGACTTGAAGTGCAACCATTGCCACAAAGAATTCAAAAAGCGTACTCATTTGAATCAGCACAAACTGGTGCACACGGATCGCAGCAGAGACTTCTCCTGCCACATCTGCGGCAAAATGTTCTTCATGAAGGGAACATTGAGCACCCATATAATGACACATGAAAATGTCAAAccttttaaatgtgaattttgTCCGATGGCATTCAAAGCAAAAGGAAACCTTCAGTCTCATATCACATTGCATTCTGGAACAAAACCGTTTGTTTGTGAACAATGCGGGAAGAGTTTTAGAGTTAAAAGACACTTGAAATCACATTCCATAATACATACAGATCTAATGCCATACAAATGTCAATATTGTGACAAaacttttagatttaaaacCCGTCTTAACTTACACCTGAGGCAGCACACGGGCGCTAAGCCGTACAATTGTGCTCAATGTCAGAGAGACTTCACGAATGGTTCAAACTATAAGAAACATATGAAACGGAGACATAATATTGATACCTCATCAATATGGAAAAAGTATTTGAGTAATGGAAGTGCGGCAACAGAAGAGGGTAAAGATATGGACGCTGGCAAGACATAA
Protein Sequence: MTKVDKYCRLCAELTEDLIYADEEAAFNSKIAKKMLWINIDVSPSNKLPKSICYSCFDQLERTWIFLKNVREAQEKLNQLFSTNSEHKVKLGKQSSDVANPVDMNWDDFQDVKVDIKDEDIMTVITTNKFIEGLENLKTEQCPENDQDFVIEDNGFSSSTDSEQPSDVTVKKKRSKKKVSQHDKHEDKTLYIEPIDIADLDVTWEEEACRCAHCDAQCKNISLLRLHSQHIHNSCCIFKCVSCGKVVSNYKSFVKHLRLHKEKLNYCCEYCDQKFTMTKFIKRHKHVEHGSGNLTCCRKCGMIFDTVEQLHDHLEKYNKSIKKMFRKAIDNVEEQDLKCNHCHKEFKKRTHLNQHKLVHTDRSRDFSCHICGKMFFMKGTLSTHIMTHENVKPFKCEFCPMAFKAKGNLQSHITLHSGTKPFVCEQCGKSFRVKRHLKSHSIIHTDLMPYKCQYCDKTFRFKTRLNLHLRQHTGAKPYNCAQCQRDFTNGSNYKKHMKRRHNIDTSSIWKKYLSNGSAATEEGKDMDAGKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01139155;
90% Identity: iTF_01149824;
80% Identity: -