Basic Information

Insect: Papilio machaon
Gene Symbol: -
Assembly: GCA_001298355.1
Location: NW:4750414-4756662[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.5e-05 0.0019 18.2 1.3 2 23 469 490 468 490 0.97

2 8 1.8e-05 0.00094 19.1 2.3 1 23 496 518 496 518 0.98

3 8 1.8e-06 9.5e-05 22.3 0.3 2 23 527 548 526 548 0.97

4 8 4.8e-06 0.00025 20.9 0.7 1 23 554 576 554 576 0.99

5 8 4.1e-07 2.2e-05 24.3 1.1 1 23 582 604 582 604 0.98

6 8 9e-07 4.8e-05 23.2 1.2 1 23 610 632 610 632 0.97

7 8 7e-05 0.0037 17.3 7.2 1 23 638 660 638 660 0.97

8 8 4.8e-05 0.0026 17.8 0.9 1 22 666 687 666 687 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.5e-05	0.0019	18.2	1.3	2	23	469	490	468	490	0.97
2	8	1.8e-05	0.00094	19.1	2.3	1	23	496	518	496	518	0.98
3	8	1.8e-06	9.5e-05	22.3	0.3	2	23	527	548	526	548	0.97
4	8	4.8e-06	0.00025	20.9	0.7	1	23	554	576	554	576	0.99
5	8	4.1e-07	2.2e-05	24.3	1.1	1	23	582	604	582	604	0.98
6	8	9e-07	4.8e-05	23.2	1.2	1	23	610	632	610	632	0.97
7	8	7e-05	0.0037	17.3	7.2	1	23	638	660	638	660	0.97
8	8	4.8e-05	0.0026	17.8	0.9	1	22	666	687	666	687	0.95

Sequence Information

Coding Sequence: ATGTGCGAGTGGCTGTCGAGCGGCGAGTGGTCCGACGTGCGGTTGATGTGCGGCGGACGCAGTTTCAGTGCACACCGCGCAGTCCTCGCCAGTGTTAGCTCCTATCTAAGGgAAGTACTTCTCTCGTGTCCAGCAAAAGACTCGCCAGCTTATATTATCTTGCCAGAATTTGATCTCGATGCTTTGTCATCCGTTCTGTACTATATTTATCACGGCGAAGTTGTTATACAACGACGTCAACTTAACGAATTTTTGGATATCATTAGAAATTTGAAGATTTATATTGATCCccaatatttgattaaaattagtaatgaTATGGAAAAATCACGTGTAGATCTTAGCTATGAGTATCAAGAAAAATATCTGGCGATGAATGATGATACAACGTGTTCGGATGCGAATAGCGAGTGCGAGTATGCTAATGCTAATTTGAAGAAAGGCGTTGAAAGTATCATGTATAAGGTACAATATTCGTTAAATGGTTTCGATTTCGGAGATAAACAGATCCGGACTCGGAGTGAAAAGTTTAGTTCATCTGCTGGTGATGTAGTGCGATGTAAAGACCGACAAAGAGGCTCGTTGCTacgtgatttatttattgagaCATATGCTCGGAACGGTTGTAGTAACGGTCTGGGGGCGGGCGTGCTGGCAATATCAAATGAGCGTTATCGTGGGTCGACATCTGTTCTTTTCGAGAATGCTAATGCCGTCCATCCTAACACACTGGCTGAGACACATGAGATCGTGTCTGAACTAAGATCGTGCGTATCACCGACGTCTAACAGACCTCTCTCTTCACATGAAAACtatcaagttttaaaaaactgtACGAAACAAtcgtttgttaaaattaatagaagtAAAGTTgatgaaaaagttttaactgaaGATAGGCGCGAAAAAGAATTGTGGATGAATAGTTTACACTTGcctttaaatttcaataacaattattCAATCAGATCAGAAAGTTCCACATTAGACTTAAGAATGTCGGTACCTAAATCAGGCGGTGTCAACTGTCTctttacaagaaataaatttgtggATAGTTCTTCTATAAAAGAATTCAACGAAcgaatacatacaaaaaatgaGATTAATTACAAGAgtttggatttaaaaaaaataacgacaCGAGAAGTTATCCTAAATGAAGTGCTAGAAAGTCCTTGGATCCCTCGGTTACCTTATTACTACAAGCCATTTCGTAGAAAAACCGTTGAAACTGTTCCAGTCATTTTGGCTAAGAGTCATCTTGATGCCGgtagtgataaaaataataacataaacgAAAAACTTTCCTCGAGTACGATTGATGTTACGAAAAACGATTCAAATAGTGAAATTAAAGATGCAGCAAAATCACGTTCTCGTCGTCTGAGCGCTAGAGACTTGAAATGCACAGCTTGTAACCAGGTGTTCACGAGTGAGGAATCTTTTACAACGCACATGCGTCGGCATACATCTATGACTAGATACAGTTGCGGAGAatgttataaaaccttttcgCAACTccgcaattttaaatatcacatGTCGGTGCATCGCGGCACTAAAGAGTTCGCTACTACTTGCCCTGTCTGCGGGAAATACTTTAATGATAGAGGATATCTGAGTAGCCATATGAAAATACACAGAAATAGGAAGGAATACAAGTGTTCAATGTGTCCAAAGTCGTTCAACCAGCGAGTGGCTTATAATATGCATGTTAGGATACACACAGGTGTAAAGCCACATGTGTGCGGTGAATGCGGCAAAGCATTTTCACGCAAGATGTTACTGAAGCAACATGCGCGTACGCACTCCGGTGAACGGCCCTACGCCTGCCCGCACTGTGATCGTCGGTTCGCAGATCGCTCCAATATGACCCTTCATTTAAGACTGCATACTGgAGTCAAGCCTTTCTCGTGTTCGTTGTGTCCCAAATCATTTACAAAGAAGCATCACTTAAAGTCACATCTTAATTTTCACACCGGGGCCAAACCTTATTCTTGTCCAAGATGTAAACTCGCCTTTACTCAGTCTTCGAACATGAGAACCCATCTCAAAAAATGCAACGCACCTGACGCAATTCTCACACCAGAAGCTTCTTCTTAA
Protein Sequence: MCEWLSSGEWSDVRLMCGGRSFSAHRAVLASVSSYLREVLLSCPAKDSPAYIILPEFDLDALSSVLYYIYHGEVVIQRRQLNEFLDIIRNLKIYIDPQYLIKISNDMEKSRVDLSYEYQEKYLAMNDDTTCSDANSECEYANANLKKGVESIMYKVQYSLNGFDFGDKQIRTRSEKFSSSAGDVVRCKDRQRGSLLRDLFIETYARNGCSNGLGAGVLAISNERYRGSTSVLFENANAVHPNTLAETHEIVSELRSCVSPTSNRPLSSHENYQVLKNCTKQSFVKINRSKVDEKVLTEDRREKELWMNSLHLPLNFNNNYSIRSESSTLDLRMSVPKSGGVNCLFTRNKFVDSSSIKEFNERIHTKNEINYKSLDLKKITTREVILNEVLESPWIPRLPYYYKPFRRKTVETVPVILAKSHLDAGSDKNNNINEKLSSSTIDVTKNDSNSEIKDAAKSRSRRLSARDLKCTACNQVFTSEESFTTHMRRHTSMTRYSCGECYKTFSQLRNFKYHMSVHRGTKEFATTCPVCGKYFNDRGYLSSHMKIHRNRKEYKCSMCPKSFNQRVAYNMHVRIHTGVKPHVCGECGKAFSRKMLLKQHARTHSGERPYACPHCDRRFADRSNMTLHLRLHTGVKPFSCSLCPKSFTKKHHLKSHLNFHTGAKPYSCPRCKLAFTQSSNMRTHLKKCNAPDAILTPEASS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01144000;
90% Identity: iTF_01144676;
80% Identity: iTF_01144676;