Basic Information

Insect: Papilio machaon
Gene Symbol: -
Assembly: GCA_001298355.1
Location: NW:447119-459921[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00045 0.024 14.7 3.0 1 23 234 257 234 257 0.95

2 15 7.2e-05 0.0039 17.2 0.4 2 23 293 315 292 315 0.96

3 15 1.7e-05 0.00093 19.2 1.7 1 23 321 343 321 343 0.97

4 15 7.7e-05 0.0041 17.1 0.2 1 23 349 371 349 371 0.98

5 15 2.6e-06 0.00014 21.8 0.4 1 23 377 399 377 399 0.97

6 15 0.015 0.82 9.9 3.4 1 23 405 428 405 428 0.97

7 15 0.0048 0.26 11.5 1.1 1 23 669 691 669 691 0.98

8 15 0.59 31 4.9 0.1 3 23 716 737 714 737 0.94

9 15 0.0017 0.091 12.9 0.7 2 23 759 780 758 780 0.94

10 15 0.0023 0.12 12.5 1.3 1 23 784 806 784 806 0.98

11 15 0.0058 0.31 11.2 0.3 1 23 813 836 813 836 0.95

12 15 6.3e-05 0.0033 17.4 1.2 1 23 871 894 871 894 0.97

13 15 0.00019 0.01 15.9 1.4 1 23 900 922 900 922 0.98

14 15 6.8e-06 0.00036 20.4 1.2 1 23 928 950 928 950 0.99

15 15 8e-06 0.00043 20.2 3.2 1 23 956 978 956 979 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00045	0.024	14.7	3.0	1	23	234	257	234	257	0.95
2	15	7.2e-05	0.0039	17.2	0.4	2	23	293	315	292	315	0.96
3	15	1.7e-05	0.00093	19.2	1.7	1	23	321	343	321	343	0.97
4	15	7.7e-05	0.0041	17.1	0.2	1	23	349	371	349	371	0.98
5	15	2.6e-06	0.00014	21.8	0.4	1	23	377	399	377	399	0.97
6	15	0.015	0.82	9.9	3.4	1	23	405	428	405	428	0.97
7	15	0.0048	0.26	11.5	1.1	1	23	669	691	669	691	0.98
8	15	0.59	31	4.9	0.1	3	23	716	737	714	737	0.94
9	15	0.0017	0.091	12.9	0.7	2	23	759	780	758	780	0.94
10	15	0.0023	0.12	12.5	1.3	1	23	784	806	784	806	0.98
11	15	0.0058	0.31	11.2	0.3	1	23	813	836	813	836	0.95
12	15	6.3e-05	0.0033	17.4	1.2	1	23	871	894	871	894	0.97
13	15	0.00019	0.01	15.9	1.4	1	23	900	922	900	922	0.98
14	15	6.8e-06	0.00036	20.4	1.2	1	23	928	950	928	950	0.99
15	15	8e-06	0.00043	20.2	3.2	1	23	956	978	956	979	0.96

Sequence Information

Coding Sequence: ATGTCTGAAAATTGGGAGTTGGAAGGCGACTTATGTCGTTGTTGTCACGCCGAaggtgtttttattaatatgtcgAAACCGCGCGAACTAAATGGGATAATGGAAATCTATTCGAACATGTTAAAAGCCTGTTTTAAAGTAGTTATAGATTCCGTACCAGGCCCGTTACATAATgtgacatataaaatttgtgaaTCATGTGTGTTGCGACTCAGGGATGCTTATGACTTTATGAAACAGGTGCAAAATTGtgagaataaatttaaagactATTACAACAGGAATGCCATTAAAGTTAaagtATCAAAAAGTGATTCCGTCGTATTTGTTAAAGAAGATGAGCAAGATTCTTTATCagacTCAAATGACTGTGTCGTGCCTATCAAGGGGGAAGAGGAGGTGGAGGAGGAGTTTTTAATAGattaCAAGAATTGTTCACTCGATGATGAGAACATTCTGGATTTAGAAAATGAAGatttaataaaaccaGTGACAAAACAGAAAGAGAAAAGGAAAGTAACAAAAAAGGTGAATAATGATGACAAAGATGTGAgcaaattgataaataaattgaaaaaggtaaataataaaaaggaaattaagAAAGTACAAAAAGACAGCACTTTGGATGATAaagatGATGAAATATTATCGTTGATAAACTTCACGTCCATACGAGATGAAAACGGTGTCATCGTTCACAATTGCAACGTCTGCAAGAAGAACTATGCGACTAAAGGAGCGTTTACGAAACATTACAGACAAATACATCTTAAATTACGTAAGGATCGTCGTTCTTGTCACTTGTGCGATGAGAAAGTATCTAAATATACGAAAGCTTTTCATTTAGAATCGAAACATGGTATTACTGCAACGACTTGTAATGTTTGCGGGAAGAAATTCGCATTTCCTTATGAAGTTATAACCCACCAACGATATCAACATATGGGTGAAAAGAGATTCCAATGTGAAGAATGTGGCAAATGTTTTGGATCCAAACTCTTATTGAAAAATCATCTTGTCTCGCATTCTACTACTAGAGATTTTATTTGCGACATCTgttttaaagcatttaaaacCGACATAGCCCTACGTAcccatattaaaatacatgatCAAAATAAACCTCATATTTGTAATATCTGTGATAAGGCATTTAAAACCGAAATAGCCTTACGATTGCATATTAGAATACATCTTAATATTAGGCCCCATGTTTGTAATATCTGTAATAAAGCTTACACTGAAATGGGAAGTCTAAGATGTCACATACGGAGGAAACATTCAGATGaaatggcagTAACGATaactaagaataaaaaaggACCTATCATAGATCCCGCATTATGTCGATGTTGtcgttcaataaaaaaatgccgTCTCTTATCGACCGAATACGAATGGATGGGAAATAAGGAGGTGTACTCCGATATGCTTATGGATTGCTTTGGATTACTTCTATCACATCTAGATGGTGATAACAAAGACACTTGCATCTGTGCAACCTGTGTGTGCAGGTTACGAGAGGCTTGTGCATTCCGACAGCAAGTTTTGCAGTCAGAGGAGGTCTTTATGAAGGCAAAACTTGATGGAAATAGAGATGACAATGTACCACAATTCATGGTGGAACTGAAAGTCGAACCAATAGAAGAGATTGAAACCGATATTCAAATGGATAATGTAACTGATATAATTGAGAACCAAGAAGAAAAACCAACTCTAGATATTAATGTCAAAATGAATAAGTCAACCATAAAAGTACCTAGACGGAGATCAGTTCGTACAAAACATGTCACTTCAGATCCAATGAAGAGtgaagttaacaaaataagaaGGAAGAAAGTTAGGATGGATGATTTACTGGATACAGaaatacaggaaaaaaaatcaatttctaGAAAGGcgaaaaaatctattattgaCCATGAACAGATGGCTTACGCTAACACAGTGACTATAGTTCACAATTCCTATGTCTGTCCGTTCCATAACAAAGTGAGCAATTACTATTGCTACTACTGCAAGGATCAGTTTACGAATCCCATTGAATTACGTGAACATACAATGTCACACGATCCTAAAACTCTGTTTGAAAGCATGATGGATAATAGAAAGATACCAAAAATCGATATCACAAGAATCGATTGTCGATTGTGTCAGGAAAAAATCGATAATCTGGAAACATTGAAACAGCACCTCACTATTATCCATGGTAAAGAATTACATCCAATCGAGAAcgagtttttaaaattcagatTGACATTAGACAATTTAACTTGTACGGAATGTAAGAGCACATTTCCTTATTttgatctattaaaaaaacatatggtTGAACATTTTGGTACATTTATTTGTGATATGTGTGGAGCTTGTTTCTTAGAACAGACGTCGTTACGCACTCATATAAAATCACATAATAAAATCGAGGCGTGCTTCCCTTGTGAGATTTGTGGGAAAAATCTCAAATCTAAATACAGTAGGTACTTACATGTAGCGACAGTTCATGAAAaaaaaccaacggttaattgttacaaatgtGAAGATAGCTTCCTCTCGTATGCATTAAGAAATCGACATCTGATAGAAGTTCACGGTGATAAAAGGACATTCCCTTGCAAATTGTGTGATAAAGTTTACAACagaagaaaaacattaatgGAACATAATCGTcgtatacatttaaaagtttacagACATCAGTGTGATTTGTGCGACCAAAGGTTTTATTTGCCGTCAAGATTGAAAGAGCATATGGCAACACATACCGGTGAAAGGAACTTTCGTTGTGAATTCTGTGATAAAAGTTATCCAAGGTTACAGTCGTTGCAGGAACATTTACGTTCACACAGTAATGAAAGACGGTATAAATGTGATATATGCAATTCAACTTTCACACAAAATGGCAGCCTCAAAAGTCACTTGAAGAGTCACCATCAAGGGTATGAAGTGGAATCCAGCTTTAAttaa
Protein Sequence: MSENWELEGDLCRCCHAEGVFINMSKPRELNGIMEIYSNMLKACFKVVIDSVPGPLHNVTYKICESCVLRLRDAYDFMKQVQNCENKFKDYYNRNAIKVKVSKSDSVVFVKEDEQDSLSDSNDCVVPIKGEEEVEEEFLIDYKNCSLDDENILDLENEDLIKPVTKQKEKRKVTKKVNNDDKDVSKLINKLKKVNNKKEIKKVQKDSTLDDKDDEILSLINFTSIRDENGVIVHNCNVCKKNYATKGAFTKHYRQIHLKLRKDRRSCHLCDEKVSKYTKAFHLESKHGITATTCNVCGKKFAFPYEVITHQRYQHMGEKRFQCEECGKCFGSKLLLKNHLVSHSTTRDFICDICFKAFKTDIALRTHIKIHDQNKPHICNICDKAFKTEIALRLHIRIHLNIRPHVCNICNKAYTEMGSLRCHIRRKHSDEMAVTITKNKKGPIIDPALCRCCRSIKKCRLLSTEYEWMGNKEVYSDMLMDCFGLLLSHLDGDNKDTCICATCVCRLREACAFRQQVLQSEEVFMKAKLDGNRDDNVPQFMVELKVEPIEEIETDIQMDNVTDIIENQEEKPTLDINVKMNKSTIKVPRRRSVRTKHVTSDPMKSEVNKIRRKKVRMDDLLDTEIQEKKSISRKAKKSIIDHEQMAYANTVTIVHNSYVCPFHNKVSNYYCYYCKDQFTNPIELREHTMSHDPKTLFESMMDNRKIPKIDITRIDCRLCQEKIDNLETLKQHLTIIHGKELHPIENEFLKFRLTLDNLTCTECKSTFPYFDLLKKHMVEHFGTFICDMCGACFLEQTSLRTHIKSHNKIEACFPCEICGKNLKSKYSRYLHVATVHEKKPTVNCYKCEDSFLSYALRNRHLIEVHGDKRTFPCKLCDKVYNRRKTLMEHNRRIHLKVYRHQCDLCDQRFYLPSRLKEHMATHTGERNFRCEFCDKSYPRLQSLQEHLRSHSNERRYKCDICNSTFTQNGSLKSHLKSHHQGYEVESSFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -