Pmac010205.1
Basic Information
- Insect
- Papilio machaon
- Gene Symbol
- -
- Assembly
- GCA_001298355.1
- Location
- NW:955841-969818[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.7e-05 0.002 18.1 0.9 1 23 265 287 265 287 0.98 2 20 0.64 34 4.8 1.3 1 23 294 316 294 316 0.96 3 20 5.4e-05 0.0029 17.6 3.7 1 23 348 371 348 371 0.94 4 20 0.014 0.72 10.1 1.1 2 23 377 399 376 399 0.95 5 20 6.2e-07 3.3e-05 23.7 0.2 2 23 413 434 412 434 0.96 6 20 5.9e-05 0.0032 17.5 1.1 1 21 440 460 440 465 0.94 7 20 0.00012 0.0062 16.6 0.8 1 23 473 496 473 496 0.95 8 20 0.00086 0.046 13.8 3.0 1 23 502 525 502 525 0.97 9 20 8.6e-06 0.00046 20.1 0.7 1 23 534 556 534 556 0.98 10 20 5.8e-05 0.0031 17.5 0.4 1 23 562 585 562 585 0.96 11 20 0.45 24 5.3 1.7 2 23 744 766 743 766 0.96 12 20 0.17 9.3 6.6 4.4 1 21 790 810 790 812 0.95 13 20 0.00015 0.0079 16.2 0.1 1 23 818 840 818 840 0.98 14 20 0.0092 0.49 10.6 0.4 3 23 847 868 845 868 0.95 15 20 0.00038 0.02 14.9 0.4 1 23 874 896 874 896 0.98 16 20 0.00057 0.03 14.4 0.3 1 23 902 925 902 925 0.97 17 20 0.0079 0.42 10.8 3.9 1 23 934 956 934 956 0.94 18 20 7e-06 0.00037 20.4 0.3 1 23 962 984 962 984 0.95 19 20 6.5e-07 3.5e-05 23.6 1.2 1 23 990 1012 990 1012 0.98 20 20 0.00019 0.01 15.9 2.0 1 23 1018 1041 1018 1041 0.95
Sequence Information
- Coding Sequence
- atggaattaattaaagaagaaaTGACAACGTCTTCCTATTGTGTGAACTGTTTGTGCAAATCCAAAGATAGAAATATACTGTACTACAAACTACAGAGTgaacatttgaaaattatatttaaggtTGATGCTCTCGCTCTATGTTTTGTGTGCAAGAAACATGTACAAAATGCAGAATGTCTAAtagaaaaaattctaaataatcaaattttagttaatttgcATAATttttcagaCCAAACAATTGATGTTATGGTGCAACCATACTTTAATATAGCAGTTTTAGATACAATTGAATTATCTAGTATTGACGTACAAACAGAAGAAGCAACTATTGTATATAAACATGGAGTATATAAAGAATGCATGGTTaagaatgaaatgaaatgcgAATTTGAAGATTATTTGCAGAATGATAATGATTTCATagatataaaagtagatataaaaaatgaactcTCAGACATCGCTGAATGTGATACTGAtattaatgaagtaaaaatactaaagaaaactgttaaaaagaaaaaaggaataaataaagGTAGAAAAAGGAAAGCTGCAGTAGTTACTAATGGAATGGAAGAAAGAAATTGTCAAATAGACAATGATGTGAATTCTATTAATGttatggatttatttaaagaattagAAACAAAGGAAGCACTTGAAAAATCTAAACTGAAAAAATCAATTGaaagaacatcaatacaaaagttttatataaatagagaaCAATTAATGCAAGAGAGAAATATTAAGGCTAATGAAAAAACGTACATTAATTGTGTGTACAAATGTACGGACTGCGTAAAAGGTTTTGCATATAAAGCTACTTATCAAAAACATATGGAATTACATAGTAAGGATAAAGGTAATTACGTATGTAATGTATGTAAGCAAAGAATGGATACAgatgaaaaattgtttcagcataaaaaattacatcaaattCGTTACAAATGTTTGATATGTGGCATTACACAAAAGACGTGTATGAGGGATCATTATAATTCCTATCATTCCAAAGTTGCTGTactttacaaatgtaaatccTGTCCAAGGACTTTCACaGACCGGTATTATTTAAGGAAACATGTCACTTACAGACACAAAGATAGACGTGTGACATGCGCGCATTGTATGAAGACGTACGCTAACAAAGATGTACTCAAAAATCATATACAATTAAGACATCCAACAGTATTTCCGCCAGCGGAATTAAAGAAGTCAATTGTATGCAATGAATGTGGTAAAGCATTTAAATCTCCGTCACAACTTAAAGCCCACAGTCTTAAACATTCCTCTGAGAAGAAGTTCTATTGTGTCGAATGTGATaaAAGTTTTAAGTCTGAAAATACATTAAAGCAACATTTAAAGTTGACAGCGAGACATGTCAACCCTAGCGAATTACAATATCTCTGTACGCAGTGCGACAGAAGATTTGGAATTAAACGAGACTTGGAACGCCACATGAACAGGATACATCTTAATATAAGACCTTATAAATGTGATTTGTGTGAAAAGGCATTTAATAATAGTTGGTGCgtaaagaaacataaaaagaTTTCACACGAGGGATACAAAAGGCCGTACATCTTCCCTTGCACTATGTGCGATAAGATATTTGACcaAAAATCTATTCTCAAATCGCACATTAGAACACATACTGGCGAACGACCGTTCCAGTGTACAATTTGTCCGGCGAAGTTCACGCAGTCCAGTAGTCTCGGCACCCATACAAAACTAGTCCACCTCAAGCAAACAAGAACTGGAAAACCNNNNNNNNNNNNNNNNGTTACTAAAATTACAGAATGTTTTGGAAAAGACattttaattacaattctGCCAAGAATTTGCAAATTATGTATACAGAAAATTGAAGAAGTGTCTTCATTTCGTAACCTTATAATTAGCAaccaaaatatacttttaaatagacTGAAAAACAACACTTACTTACCTAAAGacttaatctattttaaagtagagacggaaaaagaaaataaagagcATTACAAATACACCAATGTTAAAATTGAACAAATCGAAAATGAAGACGCAAGTCAACCAAAATTTAGTGAAGTTGTAGATAATTCTGACTATGATGATAATCTTTccttatcttttattaaaaaatctaaagaaGACATCCATAAGAATGAAAAGCACCCGGAAAAACAGGAAACATCATCAAATGAAATGGAAATAACAGAAAATCGTACAAACAAAtgtttaacatgttttaaattatttctcacACAAACAGATTtagtaaaacattataataaagaccataaaaattataaaaataaagacacaaaagataatatttatgaaatagttacagatgataataatttcaaatataaatgcaGAAAATGTGATAAGTTATTTCAgagtaaagttaaaataaataaacatattttatgtcataCACAAGAGAGACCGTTTGTTTGTAAACTATGTGgtaGAACATATAAAGTAGCATCGGATATAGTAAGACATGGCAGGGTACATGACGATTTGAAAGTCCCTTGTAAGTTCCGATGTGGATATAGTACTGTATATAAAGGTGCTTTGAAGCAACATGAAAAACGACATAAGAAAGAATACACTTACACTTgtgataaatgtaataaaggtTTTGAAGTATTAACATGGTATGAACAGCATCAGAACATACATACAGGGGATAAACCTTTTGTCTGTAATATTTGTGGAGTTGCCTTTCATATGGACAGgtacCTACAAGTTCATATCCGATCGGTTCACCCACAATCATATGTTAGTGAGAGATTTCTATGTGTTCACTGTTCGAAGCCTTGCAGTTCTAAAAAAGCTCTTACACTACATTTAAAGGAACACGGTATAACGTCGAAATTCCTTTGCGATATATGCGGGAAAGTATTCTCAGAAGCCAGACTATTGAGAATTCACAAGCGAATGCATCTCGGTATCAGACCTTATAGCTGCAGtaTATGCAAGAAGACGTTCGCAAAACGATCCAATTTGACTGTACATGCGCAAACTCACAGCGGCGAGAGAAGTCATGCCTGCGAGAGTTGCGGCAAACGATACACACAGAGAGGGACACTGCTCAGACATGTACAGAGaTTTCATAAAGGAACTAGTTTGGAAGTTGTAAGAAACGAAACATAA
- Protein Sequence
- MELIKEEMTTSSYCVNCLCKSKDRNILYYKLQSEHLKIIFKVDALALCFVCKKHVQNAECLIEKILNNQILVNLHNFSDQTIDVMVQPYFNIAVLDTIELSSIDVQTEEATIVYKHGVYKECMVKNEMKCEFEDYLQNDNDFIDIKVDIKNELSDIAECDTDINEVKILKKTVKKKKGINKGRKRKAAVVTNGMEERNCQIDNDVNSINVMDLFKELETKEALEKSKLKKSIERTSIQKFYINREQLMQERNIKANEKTYINCVYKCTDCVKGFAYKATYQKHMELHSKDKGNYVCNVCKQRMDTDEKLFQHKKLHQIRYKCLICGITQKTCMRDHYNSYHSKVAVLYKCKSCPRTFTDRYYLRKHVTYRHKDRRVTCAHCMKTYANKDVLKNHIQLRHPTVFPPAELKKSIVCNECGKAFKSPSQLKAHSLKHSSEKKFYCVECDKSFKSENTLKQHLKLTARHVNPSELQYLCTQCDRRFGIKRDLERHMNRIHLNIRPYKCDLCEKAFNNSWCVKKHKKISHEGYKRPYIFPCTMCDKIFDQKSILKSHIRTHTGERPFQCTICPAKFTQSSSLGTHTKLVHLKQTRTGKPXXXXXVTKITECFGKDILITILPRICKLCIQKIEEVSSFRNLIISNQNILLNRLKNNTYLPKDLIYFKVETEKENKEHYKYTNVKIEQIENEDASQPKFSEVVDNSDYDDNLSLSFIKKSKEDIHKNEKHPEKQETSSNEMEITENRTNKCLTCFKLFLTQTDLVKHYNKDHKNYKNKDTKDNIYEIVTDDNNFKYKCRKCDKLFQSKVKINKHILCHTQERPFVCKLCGRTYKVASDIVRHGRVHDDLKVPCKFRCGYSTVYKGALKQHEKRHKKEYTYTCDKCNKGFEVLTWYEQHQNIHTGDKPFVCNICGVAFHMDRYLQVHIRSVHPQSYVSERFLCVHCSKPCSSKKALTLHLKEHGITSKFLCDICGKVFSEARLLRIHKRMHLGIRPYSCSICKKTFAKRSNLTVHAQTHSGERSHACESCGKRYTQRGTLLRHVQRFHKGTSLEVVRNET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -