Basic Information

Insect: Papilio helenus
Gene Symbol: -
Assembly: GCA_026546675.1
Location: JAOCNA010000032.1:7284581-7290013[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.43 76 5.3 4.1 3 23 30 50 28 50 0.95

2 12 2.6e-05 0.0046 18.5 2.8 1 23 88 111 88 111 0.98

3 12 0.0053 0.94 11.3 2.1 1 23 113 135 113 135 0.97

4 12 0.029 5.1 9.0 0.6 1 23 169 191 169 191 0.95

5 12 1.7e-05 0.0031 19.1 0.6 1 23 277 300 277 300 0.93

6 12 0.0002 0.036 15.7 2.8 1 23 312 334 312 335 0.95

7 12 0.0027 0.47 12.2 0.2 3 23 342 363 340 363 0.95

8 12 0.18 32 6.5 1.4 2 23 369 390 368 390 0.94

9 12 0.0058 1 11.1 4.1 1 23 395 417 395 417 0.97

10 12 0.01 1.8 10.4 1.2 1 23 423 445 423 445 0.96

11 12 6.6e-06 0.0012 20.4 1.9 1 23 451 473 451 473 0.98

12 12 6.5e-06 0.0012 20.4 0.3 1 23 479 502 479 502 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.43	76	5.3	4.1	3	23	30	50	28	50	0.95
2	12	2.6e-05	0.0046	18.5	2.8	1	23	88	111	88	111	0.98
3	12	0.0053	0.94	11.3	2.1	1	23	113	135	113	135	0.97
4	12	0.029	5.1	9.0	0.6	1	23	169	191	169	191	0.95
5	12	1.7e-05	0.0031	19.1	0.6	1	23	277	300	277	300	0.93
6	12	0.0002	0.036	15.7	2.8	1	23	312	334	312	335	0.95
7	12	0.0027	0.47	12.2	0.2	3	23	342	363	340	363	0.95
8	12	0.18	32	6.5	1.4	2	23	369	390	368	390	0.94
9	12	0.0058	1	11.1	4.1	1	23	395	417	395	417	0.97
10	12	0.01	1.8	10.4	1.2	1	23	423	445	423	445	0.96
11	12	6.6e-06	0.0012	20.4	1.9	1	23	451	473	451	473	0.98
12	12	6.5e-06	0.0012	20.4	0.3	1	23	479	502	479	502	0.98

Sequence Information

Coding Sequence: ATGGCTTCACCCACCCATTTGGATTCAGCTAGCAAAACAGAGCAAAGCAAAAAGCTTACCACAATTGAGATAGTTGGCGGCATAAATTGTCACATCTGCCAGTCCAGGTTCCAAAACAAAAAGGATTATGACACTCACTATTTTAAACATGAGAGTAATAATGCAGCCATAGTGTACACATGCGTAGTGTGCAACCAGAGCATCTCCGGCTATCCCAGCTTCCGAGGACATTGTTACACGAAGCATGTTATTAAAAGTAAATTCAAGTGCGACCATTGTAATAAGGAGTTTTCAAAATTTATAGCTCTAAAAGAACATATCAATACACAGCATAAGTTTAATTGTCGTTCGTGCAACAAAAATTTTAATTCAAAAAAAGAACGGCAGATCCATCAGATTGTTCATAACACCGACAATCCGCCGTACAATTGTCAGTCGTGTAACAAACAAATCAACAGTGTGGACAGCTGCGAGGACCACATCAGTCTACATTCCTCCTTCATATACATGTGCCCCATCTGCGGTAAAAACGAAACCAAAAAGCATGAAGCAGTTCTACATCTCAGACAGCACTTTAAAGATGAGGATATTAATGAGACAAGTTTAAATGGTGAAGAAATACCTCCTGATGATATCATAGAGAACCTTGGTGGTATATCATGCTGCATTTGCTTCACTGTGCATAAAAACCGTTTGGCTTTCGATGCTCACTTCTCTCTGAAACATGGTGATTTAGATATCGTGTACACTTGTAATAAATGCGAAAAGCAATGCGAAAAGTACTCCATATTTGCTAACCACTGCTACTACCATTATATGAAGAACAGATTCAAATGCGACCATTGCTTGAAGACCTTTGCCCGGCCGTCGCTGCTGGCGGCGCACACGGAGGCGTACCACGGCGCTCGCGCTCTCGACGGTGCGGAGAAGCCGTTCGCGTGCACGCGATGTGAGCGCCGCTTCGCCACGCAGCGCGCCATGCGCACGCACATGCGCGACCACCACGGACTCTCCTACGTGCCCTGCCCGCATGGCTGCGAGGACATTTTCCGAACACCGAAAGAGCTAACTTTGCACCTACGCAGCCATGACGAGTCACAGACGCGGTGTCGCGTGTGCGGTCTGCTCTTCACATCGCTATCCTCCTGCGAGAAACATCTAGAAGCTCACAGGAAAACTGTACACAAGTGTCCCATATGCAACAAGAACTACGGAGAGAAGCACATGGTCAAAAAACATGTCTCCAAACACTTTGAAACCGTCATCCACATCTGCAAGGTGTGCGGCAAGATATACAACGCCAAGAACAGGCTGGTGGAGCACAGCAAGACTCATGCTGAGGTGAAGGAACACACCTGTAGCCGCTGCGGCAAGGGCTTCCCCGGACGGCAGCAGCTGCAGCAGCACATGAACACACACGACGGCCTCAAGCCGTACAAATGTGACGCATGCCCCAAAACATTCGCTAGCTATCCCAATTGGATGAAACATATGCGGAGAATACATAATATTAAAGGGAAAATAAAGAAAATGAGTGAAGCCCTAGAATCCAATAGTGAAAATTCTGATACAAGTGGCTCCCAGGAGAGCCCGGTTAGTACTGTAACCTCGGAAACATCGGACACAAATGTAGATGCAGACACGGTTCAATCAGATGACAGCGCGATGGAGTCGGACAGTATTGAGCCTTTCGGTATAGAAAATGATTTGCAATTATTTGAAGCCACTGATATGTGCACCGATGTGTTGGCGGAGAGCACCAATCTGTTCACACCTGAATCCATAGAGGAGTGTCTGGTGAGGGAGAGCTCGTCGCCGGGCGACTACCCGCGCGAGTACGGGCCCGAGTTCAACAGCGGGCTGGGGGGCGGCGGCTACGGGTACATCGACCTCGAGGAGTGCGACCTGCCGCATATAGACCCGCGTCTCACCGTCCGCCTCGCGCACCAACCGCACCAACCCCACCAACCCCATCAACCCCACCACGACACGTACGCACCACAGTACGCACCCGGGTACGGGACAGAGTACGCGGGTACGTACGCGACGGAGTACGCGCCGGTGTACTCGCCGGTGTACTCGCGGCCCGCGGAGTACGAGCCCGCCAAGTGGGAGCCGCTCATCACTAAAGTGTACAACGAGTACACGTACGGCGACAACGCGCTGTCCCTCATGAATACAGATATATTTTGA
Protein Sequence: MASPTHLDSASKTEQSKKLTTIEIVGGINCHICQSRFQNKKDYDTHYFKHESNNAAIVYTCVVCNQSISGYPSFRGHCYTKHVIKSKFKCDHCNKEFSKFIALKEHINTQHKFNCRSCNKNFNSKKERQIHQIVHNTDNPPYNCQSCNKQINSVDSCEDHISLHSSFIYMCPICGKNETKKHEAVLHLRQHFKDEDINETSLNGEEIPPDDIIENLGGISCCICFTVHKNRLAFDAHFSLKHGDLDIVYTCNKCEKQCEKYSIFANHCYYHYMKNRFKCDHCLKTFARPSLLAAHTEAYHGARALDGAEKPFACTRCERRFATQRAMRTHMRDHHGLSYVPCPHGCEDIFRTPKELTLHLRSHDESQTRCRVCGLLFTSLSSCEKHLEAHRKTVHKCPICNKNYGEKHMVKKHVSKHFETVIHICKVCGKIYNAKNRLVEHSKTHAEVKEHTCSRCGKGFPGRQQLQQHMNTHDGLKPYKCDACPKTFASYPNWMKHMRRIHNIKGKIKKMSEALESNSENSDTSGSQESPVSTVTSETSDTNVDADTVQSDDSAMESDSIEPFGIENDLQLFEATDMCTDVLAESTNLFTPESIEECLVRESSSPGDYPREYGPEFNSGLGGGGYGYIDLEECDLPHIDPRLTVRLAHQPHQPHQPHQPHHDTYAPQYAPGYGTEYAGTYATEYAPVYSPVYSRPAEYEPAKWEPLITKVYNEYTYGDNALSLMNTDIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01149890;
90% Identity: iTF_01145499;
80% Identity: -