Basic Information

Insect: Papilio helenus
Gene Symbol: Nop56
Assembly: GCA_026546675.1
Location: JAOCNA010000024.1:93734-100546[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.3 7.6e+02 2.1 0.9 14 23 203 212 200 212 0.89

2 11 4.2e-05 0.0074 17.9 0.8 1 23 218 240 218 240 0.98

3 11 3.9e-05 0.0069 18.0 1.8 1 23 246 269 246 269 0.96

4 11 0.023 4 9.3 3.3 1 21 275 295 275 297 0.95

5 11 8e-05 0.014 17.0 2.7 1 23 303 325 303 325 0.99

6 11 8.7e-06 0.0016 20.0 3.5 1 23 331 353 331 353 0.98

7 11 0.00054 0.096 14.4 1.0 1 23 361 384 361 384 0.97

8 11 0.0078 1.4 10.7 4.1 2 23 391 412 390 412 0.97

9 11 0.045 8 8.4 1.1 1 23 418 440 418 440 0.98

10 11 5.7e-06 0.001 20.6 2.1 1 23 446 469 446 469 0.96

11 11 1e-05 0.0018 19.8 6.5 1 23 483 505 483 505 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.3	7.6e+02	2.1	0.9	14	23	203	212	200	212	0.89
2	11	4.2e-05	0.0074	17.9	0.8	1	23	218	240	218	240	0.98
3	11	3.9e-05	0.0069	18.0	1.8	1	23	246	269	246	269	0.96
4	11	0.023	4	9.3	3.3	1	21	275	295	275	297	0.95
5	11	8e-05	0.014	17.0	2.7	1	23	303	325	303	325	0.99
6	11	8.7e-06	0.0016	20.0	3.5	1	23	331	353	331	353	0.98
7	11	0.00054	0.096	14.4	1.0	1	23	361	384	361	384	0.97
8	11	0.0078	1.4	10.7	4.1	2	23	391	412	390	412	0.97
9	11	0.045	8	8.4	1.1	1	23	418	440	418	440	0.98
10	11	5.7e-06	0.001	20.6	2.1	1	23	446	469	446	469	0.96
11	11	1e-05	0.0018	19.8	6.5	1	23	483	505	483	505	0.97

Sequence Information

Coding Sequence: ATGATACTCTCTGGTCACCAGCGTGGGGAAGCGAGTAAACTATACGTGTTGTATGAGCATAGCGCGGGGTTCGCGCTATTTCGTGTGGCGGAGTTTGAAGAATTGGCAGCATTTCTGCCACAGGTTGAAGAATCGGTGACTGATTTACAAAGATTCAACTCTGTTGTTACATTAATCGCATTTCAACCGTTCAAATCTGCCGTAGTTGCATTGGAAAACATAAATTCTATATCTGAAGGTATAGTACCAGAGGACTTAAACTTATTTCTGGAGGGTGCGCTACCCAAGCGCAAGAAGAGAGCTAAATGTACCCTAGGAGTGGCAGACCCCAAGCTGGGGGCAGCCATCAGCGAGGCACTGGAGATACCATGCTCACACACTGGTGCTGTGCCGGAACTCATCAGAGGTATTCGTCATCACTTCCATGCTCTGATCAAGGGGTTAACACTAAAAGCTTGCAGTGTCGCCCAGCTTGGTCTCGGACACTCGTACTCTCGTGCCCGAGTCAAATTCAATGTTCACCGAGTTGATAATATGATCATCCAGTCTATTGCACTGTTGGATCAACTTGATAAAGACATTAATACATTCTCTATGAGAATCAGATACTTGCTGCTAAGACATATGAAATCTCACTCGGAGGACCGGCCACACAAGTGTGAAGTTTGTGAGCGAGGTTTTAAAACCGTTGCTTCACTGCAGAATCACGTGAATATGCACAATGGTGTTAAACCACATGTTTGCAAGTATTGCAATAGTCCTTTCACTACCTCAGGGGAGTTGGTACGCCATATCAAGTACAAGCATACACATGAAAAACCCCACAAATGTACCGAATGTGATTATGCTTCGGTGGAATTGTCAAAATTGCGGCGGCACGTCCGATGCCACACTGGGGAACGTCCTTATCAGTGTCCACACTGCACATATGCTTCTCCGGATACCTTCAAGTTGAAACGCCACCTGCGAACTCACACCGGAGAAAAACCATACAAATGTGATTATTGCAATTTGTGCTTCACCCAATCCAACTCATTGAAAGCACACAAACTTATACACAATGTGTCTGAGAAGCCAGTGTATGCATGCGAGCTGTGCCCAACGAAATGCGGTCGCAAGACCGATCTTCGTATCCACATTCAAAAACTACACACTTCGGATAAGCCTCTGAAATGCAAGATATGTGCAAAAACCTTTCCTGATCGTTATTCCTGCAAAATGCATTATAAGACGCACGAGGGAGAGAAATGTTTCAAGTGTGAAATCTGCATGTATGCATCGACAACGATACGGCGTCTGAAGTCTCACATGCTGAAACACACCAATGAGAAACCATTCGTCTGCGAACAATGCGATCAAAGATTCAGGCAAAAACAGCTACTGCGACGACATCAAAACTTATATCATAACCCAAATTATGTACCGAAGCCACCAAAGGAGAAGACCCACACTTGCCATGAGTGTCACCGCACATTTGCTCACAAGGGGAACCTGATCAGACACCTTGCTGTCCATGACCCGGAGTCTGGCCATCATGAGAGAGTCCTGGCACTCAAACTTGGCCGTCAGAAGAAAGCTAAGCGAGTCGATGGACAACTTAAGGAAATATGTGAAGGTGACTCGGATAGTGATGAAAATGAGCAGAGCAGTCAAATTAGTATAAAGAGTAGCGGTAAGAAGATGCAGAGTGAATATGTAACGGTCACTGACGGTGATAACCAGCAATACGTGGTGTTAGAGGTGATACACCTCGAGGATGGCTCCGAGCAGCAAGTTACCGTTATGGACCCGGAATACATTGAAGAGGATGAACAAGTTGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGTTGAGGATGATGATGATTCAGAAGACACGAAGAAAAATCAAATACTGCTGTTGCATGAACAAGAAAAGCAAAGAACATTTAAGTTGGAGAATGATGTTGACACGTGTTTTGGATTTGATGAGGAGGAAGATGTCGACGACGGTGACGATGAGATTCCTTACGAAGACAAGGCTCTTATAAACTTTGTTTAG
Protein Sequence: MILSGHQRGEASKLYVLYEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNSVVTLIAFQPFKSAVVALENINSISEGIVPEDLNLFLEGALPKRKKRAKCTLGVADPKLGAAISEALEIPCSHTGAVPELIRGIRHHFHALIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDINTFSMRIRYLLLRHMKSHSEDRPHKCEVCERGFKTVASLQNHVNMHNGVKPHVCKYCNSPFTTSGELVRHIKYKHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCDYCNLCFTQSNSLKAHKLIHNVSEKPVYACELCPTKCGRKTDLRIHIQKLHTSDKPLKCKICAKTFPDRYSCKMHYKTHEGEKCFKCEICMYASTTIRRLKSHMLKHTNEKPFVCEQCDQRFRQKQLLRRHQNLYHNPNYVPKPPKEKTHTCHECHRTFAHKGNLIRHLAVHDPESGHHERVLALKLGRQKKAKRVDGQLKEICEGDSDSDENEQSSQISIKSSGKKMQSEYVTVTDGDNQQYVVLEVIHLEDGSEQQVTVMDPEYIEEDEQVEEEEEEEEEEEEEEVEDDDDSEDTKKNQILLLHEQEKQRTFKLENDVDTCFGFDEEEDVDDGDDEIPYEDKALINFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -