Basic Information

Insect: Papilio helenus
Gene Symbol: -
Assembly: GCA_026546675.1
Location: JAOCNA010000006.1:525948-528832[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00018 0.033 15.9 0.8 1 23 272 295 272 295 0.96

2 12 0.018 3.2 9.6 0.7 1 23 312 334 312 334 0.95

3 12 4.9e-06 0.00087 20.8 1.4 2 23 340 361 339 361 0.97

4 12 1.1e-05 0.002 19.7 0.6 1 23 365 388 365 388 0.97

5 12 0.00082 0.15 13.8 0.4 2 19 392 409 391 411 0.95

6 12 2e-05 0.0036 18.9 0.5 2 23 492 513 491 513 0.95

7 12 0.049 8.6 8.3 0.3 2 23 533 555 532 555 0.96

8 12 1.1e-06 0.0002 22.8 4.2 1 23 561 583 561 583 0.98

9 12 0.0002 0.036 15.7 3.4 1 23 588 610 588 610 0.98

10 12 6.9e-05 0.012 17.2 2.8 2 23 617 639 616 639 0.95

11 12 5.1 9.1e+02 1.9 0.9 1 19 647 665 647 666 0.84

12 12 0.012 2.1 10.2 1.7 3 19 679 695 677 700 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00018	0.033	15.9	0.8	1	23	272	295	272	295	0.96
2	12	0.018	3.2	9.6	0.7	1	23	312	334	312	334	0.95
3	12	4.9e-06	0.00087	20.8	1.4	2	23	340	361	339	361	0.97
4	12	1.1e-05	0.002	19.7	0.6	1	23	365	388	365	388	0.97
5	12	0.00082	0.15	13.8	0.4	2	19	392	409	391	411	0.95
6	12	2e-05	0.0036	18.9	0.5	2	23	492	513	491	513	0.95
7	12	0.049	8.6	8.3	0.3	2	23	533	555	532	555	0.96
8	12	1.1e-06	0.0002	22.8	4.2	1	23	561	583	561	583	0.98
9	12	0.0002	0.036	15.7	3.4	1	23	588	610	588	610	0.98
10	12	6.9e-05	0.012	17.2	2.8	2	23	617	639	616	639	0.95
11	12	5.1	9.1e+02	1.9	0.9	1	19	647	665	647	666	0.84
12	12	0.012	2.1	10.2	1.7	3	19	679	695	677	700	0.93

Sequence Information

Coding Sequence: ATGGAGATTGTATACCCTATTTTGTTGATACCAAAGGAGTGTGTGAAACTGCACCACAACGCTGCACTACTTGATGACATCATATTAGACATCACCATCACATCACCCAACACTAAAGGTGAACCAATATGCATATACACTGGCTGCTGCCATATAAAATTCACAGATAAAGAATATAACACCCCAGATAAGTCAACACAAGGACTAGAATTCATAAATATTGAAGATACAAAATCAGTTCCAGATGTAGCCATTCAATCTACATATCCATCCAATGTATGGATAGATCCAGCTAGGAGTCCATACATTTATAACAATTATACAACAAATGGCCTCCCACCACAATTTGTATACAACCATCAAGCGAACCATGTGACAGTTCAGCAACATAATACATATATAACACAGAATGTGTACAGCTATCCTGAGACCATACATTATGCATCATCTGAGGAATATGGTTTAGAAACATTAATAAACCAAAACAATGCCACAGATCTGACCCATCTGTTTGATGGTGATGAATTAGAAGAATGCGGTCTACTGCTAGAAGAAATAACTTGTGAGAAAGAGCCTCCAATTTTAACTGAGTCAATTGACTTAGGTCTTCAAAGTGATAATAATGCACTAAAACAGCTAATGTCAAATGGTATTCAAATACCATCCAAACCGCAGAAGACTATAATATTTATGGGCCCCGAGTGCGGTCAGACTATACAGAAGATAGCAGTCAATGATCCATCTTTGATGTGCAACTCGGATGATGTTTCTACAATTATTGATGTTGAAAGTAGTAACAACAATCACAAGAAATATCAGTGTGAAAAATGTGAGAAAATATTTGACCAAATAACAACATTTAAGCAACACATGGTCGTATCACACGATAGGAAAAGACATCGTGGATCAGAAAGCGACAACGATGTAAAGGTGTTCATCTGTGCCCAGTGCGGGAAGAAGTTGAAGTCGCAAGAGAAGTTTGATTTGCACAGCCGCGGCCACGGCGACCCCGACCTCGAGTGCGAAAAGTGCAACAAAGTTTTCGCATCTAAATTTAGTTTGCGTACTCACCGTAAGATACACATGCGAAAATATCCATGTCCTAATTGTACGAAATCATTTAACAAACTCGCAGAGTTAAGAACACACGTTAACAAAACACATCCAAGTCAAAAATGTGATGACTGCGATTTCACAACAACAAATCAAACAGATTTGCAAAAGCACGAGGAATGTCACATTTGGCGGGAAAGTACCGAGAATTCTGAATCTTTTTTTCTTGACGACGGTGTCTCTGATATAGAGAATGATTCCGATTCCGGAAATATTTACGAATTACCGATGGATGTCGATGGAAATGACTCGATTGAAATCGATATAAAAAATGCAAATGATGTTCTTGCTAAAGTGATGTCCAATAAGGTTTTTTTACTTAATGCTAGGAAGGGAAGACAAAACAAGAGATTTAAAAAGAGTTGTGATGTTTGTTCAAAAACCTTCACTCGAATTGGAGACCTAAAAAGACACCTCATCGAGCACGTCATCAAGAGTACCCTTGCGAAGAATCCGGTCAGCAAAGATGGCACTCTCAATATACAATGCGAGGTGTGCCAAGTGCAATCCTTCACTAAGGTAGATAAGTACAAGGCGCATTTGCGCGAGCACGCAAAATTAACTTTGTACCAATGCACATTCTGTAACAAATCGTTCAGTGATTCCAGTAATTTCTCAAAACACAAGAAAATTCATGGCTCCGCGTACTACCAATGTGATCTGTGTATGAGGAAGTTTAATTCTAAAAAAATGCTTACAAAGCACATGCAGTATCATAAGGAGAACACTCCGTTGCCGTGTCGCTACTGTGACAAAACTTTTCATTTCGAGTCTATGTTAAACAAACACATCAAAAGCACACACAACAAGGCCGCGGGGACACGATTCCGCTGCAATTTTTGCCAGGCTTATTATAAAACTTTAAAAGAAAAGTGGGACCACGAATGGTATATTCATAATGTTAGAAAAGTGAAAATCGATTGTGGCATTTGCAGCCGAAAGTTCAGAAAGTACGCTGAACTGAAAAGGCACTGCTTAGATAACCACGATTTGGAAATACCACCTGCCAAGATGTTTTTACAGCAGCAGCAAGATGAAAAGTATAAAATTTAG
Protein Sequence: MEIVYPILLIPKECVKLHHNAALLDDIILDITITSPNTKGEPICIYTGCCHIKFTDKEYNTPDKSTQGLEFINIEDTKSVPDVAIQSTYPSNVWIDPARSPYIYNNYTTNGLPPQFVYNHQANHVTVQQHNTYITQNVYSYPETIHYASSEEYGLETLINQNNATDLTHLFDGDELEECGLLLEEITCEKEPPILTESIDLGLQSDNNALKQLMSNGIQIPSKPQKTIIFMGPECGQTIQKIAVNDPSLMCNSDDVSTIIDVESSNNNHKKYQCEKCEKIFDQITTFKQHMVVSHDRKRHRGSESDNDVKVFICAQCGKKLKSQEKFDLHSRGHGDPDLECEKCNKVFASKFSLRTHRKIHMRKYPCPNCTKSFNKLAELRTHVNKTHPSQKCDDCDFTTTNQTDLQKHEECHIWRESTENSESFFLDDGVSDIENDSDSGNIYELPMDVDGNDSIEIDIKNANDVLAKVMSNKVFLLNARKGRQNKRFKKSCDVCSKTFTRIGDLKRHLIEHVIKSTLAKNPVSKDGTLNIQCEVCQVQSFTKVDKYKAHLREHAKLTLYQCTFCNKSFSDSSNFSKHKKIHGSAYYQCDLCMRKFNSKKMLTKHMQYHKENTPLPCRYCDKTFHFESMLNKHIKSTHNKAAGTRFRCNFCQAYYKTLKEKWDHEWYIHNVRKVKIDCGICSRKFRKYAELKRHCLDNHDLEIPPAKMFLQQQQDEKYKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01147596;
90% Identity: iTF_01149014;
80% Identity: -