Phel005556.2
Basic Information
- Insect
- Papilio helenus
- Gene Symbol
- -
- Assembly
- GCA_026546675.1
- Location
- JAOCNA010000021.1:980823-986743[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.12 21 7.0 0.3 1 23 92 115 92 115 0.92 2 15 0.041 7.2 8.5 0.1 2 23 144 166 143 166 0.93 3 15 0.13 24 6.9 1.6 1 23 285 308 285 308 0.94 4 15 1.1 2e+02 4.0 2.8 2 23 333 355 332 356 0.94 5 15 0.02 3.5 9.5 0.3 1 23 379 401 379 401 0.98 6 15 0.00013 0.023 16.3 0.2 1 23 405 427 405 427 0.98 7 15 0.001 0.18 13.5 0.3 2 23 616 637 615 637 0.96 8 15 0.55 97 4.9 1.3 1 23 659 681 659 681 0.96 9 15 5.1e-06 0.0009 20.8 0.1 1 23 685 707 685 707 0.98 10 15 0.00015 0.027 16.1 0.2 1 23 712 735 712 735 0.96 11 15 0.00043 0.076 14.7 0.7 2 23 742 764 742 764 0.97 12 15 0.0036 0.64 11.8 4.8 1 23 770 793 770 793 0.97 13 15 9.3e-06 0.0017 19.9 3.2 2 23 800 821 799 821 0.97 14 15 2.5e-07 4.5e-05 24.9 0.8 1 23 827 849 827 849 0.99 15 15 9.8e-05 0.017 16.7 0.2 2 23 854 876 854 876 0.97
Sequence Information
- Coding Sequence
- ATGTCACCCTTCTATCGGATGTTCAATAACCGCAAATACGAAGTTATAAAACGGTTTAGAGTTTACGTGGTTGAAGTTCACACGAATATTTTCTCATTTATAGGTAGTGAATCTCCGTGTGGGGAACTACAGGAGCAGGATAATACGGGACTTCCAAAGAAAAAGAGACGCAATATTATACTTAACCCGGAAATACTAAAGGAGAGGAAGAAAAACTCAACTTTAATATTGGAATCGGCGAAATTGTGTCCCTTTAGATGGATGAAAAATTTATTCATCTGTTTCTATTGCGAACAGCAATTTTTAGATCCGGACTCCCTGAGGGAACATAACAATCTCGAACATTCGACGCCACCTTTATCGCAGATTGTACATGAGATGTCGAAACAAAAGAAACACGAATTTGTCAAAGTTGAATTAACTAATGTGAGCTGTAAAATTTGCAATCAAGTGTTGAGTGATATACCAACTCTGAAGTACCACCTAATGGATCGACACGACGTATATGTAAATTCAaacgacgGATCGGACAATACGGATATACAAGCTACAAAAAGGATCGTGCCGTTGTTTCAAGTGGATTACGACCGTAGCCTCTGTAGGCCGCTGGGCACAGTTACAAACTTTAAGAAATTACTCGCAATGGCCCAGCTGAGCTGCAAGGACCTCGCGTCCCGGAGCCCTTCACCTATATACATGGACGGAACACCTACACCTGAAATCCAGCACTACAGAATAGATATTCCACACCTACAAGTTCAAATACCTCAACAGAATGTCGATAACAGACAAAACGCACTCACTCTGTTCGAATTTACTACCGTATATCCGTTCGTCTATGGCAATAATAAATTTAAATGTTTCATTTGCTCGCAACCGTTTCTAGAAACTGCACTACTAAGACGCCATATGCATGACACACATACATACGCACCAATAAAACGTTTGGTAAACAATCGTAGGGAGAACGTAATCAAAGTGGACGTCAGCGAAATGAGTTGCAAACTGTGTCACCTTAAACCTAAGAATCTGCAGGACCTCAAAGTACATTTGAAAGTTGAACATCACAAGTTAATTGAACCGGAATTAAAGGATAATATAATCCCATTCGTGCTAGAAGGTGATGAAGAAGGATATAAGTGTGTTATGTGCGAATCGAAATTCATTAAAGTTCGGACTCTAGTGATTCATATGAGCGTACACTTTAATAACTACAGTTGTGAAATTTGTGGTTCAGCGTTCATGACGTTGCGTTTGTTAAAGAAGCATTTAGAGGTGCACGAGAGTGGAGTCATCCAAATTACAAACTCATCAATGATACTGAAAGACGAAGATGGATCTGATATTAAATTAACAATCCTTAAGGAACCCATATCTATTGATAATCTGATTATTGAAAACGAAGAAATGGATATACCCATAGATGAACTTGAAATTAAAACTGAAACGCCTGAAAAAAATGAACAGCAAATAAATCTGTCTGAACAAAAATCTTCTACATTAATATTCTTAAAGGAGCCAATCTCCATAAACAATATCGGGAATGGAACTAGAATGTCATTACGAAACCGAACGTTAAAGACTAAGACAAATACATCACGAAAGAAAAAAAGTATAGAATCGCATATAAGGATACAGAACGCATTAACATTATTTGAGTTTTCATATGTCTATCCGTTTGTATACGCGTATAATAAATTTAAATGTTATACATGCTCTGAAGAGTTTTTAGATTCACAAATACTAAAAGAACATTCTCTATACAACCATAGTATTGAAGAATTAAAGGTGGAATTAGAAAAGAAGTTTCCAGACAATGCTTTAAAAGTAGACGTCAAACAACTACAATGTAAACTTTGTGAAACTACCCTCATCAGTCTAGATAACTTGAAGGTTCATCTTAAAGAACATGGAAAAGATATAGATCCATCTTTCCAAGATAATATAATACCATTTAAATTGGGCAGTGATACATTTGATTGTCAAATTTGCGGAGACAAATACCATTTATTCCGTCTACTTATTATTCACATGAGTAAACATTTCAACAACTACAGTTGTGAAATATGCGGAAATGTGTTCGTTTCTAAAATACTTCTACAAAGACATTTACAAGTACATAAAGGAGGTAACTTTCCATGCGATAAATGCAACAAAGTATTCGCAAATTCAGCGAAAAGAATAAACCATATCAAAGAGGTACATTTAAAACAGTTCGTAAGGACGTGCCCCTTCTGCCCTGAGAGATTTAACTCAAATTATGCACGTAATAAACATTTGAGAATCTTCCACGATCAAACAACAAGACACAAATGCGATATATGTGATAGACACTTCTATCTGAAGTACCAATTGGACCTCCACAAGAGATCCGTTCATATGCAGGAACGGAACGTGGAATGCAATATATGCCACTTCAGATTCTTCTCAAAATCCACTCTGACGCGGCATATGATTACACACAGTAGTGAGAAAAATTTCAAATGCGATGTTTGTGGGAAATCTTATGCTAGTAAAAAGAATCTTCGAGAACACGCGAGATCACATTTACTTGCTCCTACTTGTTCTGTATGCAATGTTATGTTTAATGATCAGCCCAGCTTAATGGCACATATGAATTCAAATCATAACTAA
- Protein Sequence
- MSPFYRMFNNRKYEVIKRFRVYVVEVHTNIFSFIGSESPCGELQEQDNTGLPKKKRRNIILNPEILKERKKNSTLILESAKLCPFRWMKNLFICFYCEQQFLDPDSLREHNNLEHSTPPLSQIVHEMSKQKKHEFVKVELTNVSCKICNQVLSDIPTLKYHLMDRHDVYVNSNDGSDNTDIQATKRIVPLFQVDYDRSLCRPLGTVTNFKKLLAMAQLSCKDLASRSPSPIYMDGTPTPEIQHYRIDIPHLQVQIPQQNVDNRQNALTLFEFTTVYPFVYGNNKFKCFICSQPFLETALLRRHMHDTHTYAPIKRLVNNRRENVIKVDVSEMSCKLCHLKPKNLQDLKVHLKVEHHKLIEPELKDNIIPFVLEGDEEGYKCVMCESKFIKVRTLVIHMSVHFNNYSCEICGSAFMTLRLLKKHLEVHESGVIQITNSSMILKDEDGSDIKLTILKEPISIDNLIIENEEMDIPIDELEIKTETPEKNEQQINLSEQKSSTLIFLKEPISINNIGNGTRMSLRNRTLKTKTNTSRKKKSIESHIRIQNALTLFEFSYVYPFVYAYNKFKCYTCSEEFLDSQILKEHSLYNHSIEELKVELEKKFPDNALKVDVKQLQCKLCETTLISLDNLKVHLKEHGKDIDPSFQDNIIPFKLGSDTFDCQICGDKYHLFRLLIIHMSKHFNNYSCEICGNVFVSKILLQRHLQVHKGGNFPCDKCNKVFANSAKRINHIKEVHLKQFVRTCPFCPERFNSNYARNKHLRIFHDQTTRHKCDICDRHFYLKYQLDLHKRSVHMQERNVECNICHFRFFSKSTLTRHMITHSSEKNFKCDVCGKSYASKKNLREHARSHLLAPTCSVCNVMFNDQPSLMAHMNSNHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -