Pgla011289.1
Basic Information
- Insect
- Papilio glaucus
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:912-2055[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.15 9.3 6.7 0.3 1 23 71 93 71 93 0.97 2 11 7.8e-05 0.0048 17.1 0.4 1 23 101 123 101 123 0.97 3 11 0.0097 0.59 10.5 4.5 1 23 130 152 130 152 0.94 4 11 0.2 12 6.4 2.6 1 23 158 180 158 180 0.97 5 11 0.00031 0.019 15.2 5.1 1 23 185 208 185 208 0.95 6 11 0.81 50 4.5 3.0 3 23 214 234 212 234 0.91 7 11 0.0082 0.5 10.7 1.5 2 23 241 263 240 263 0.96 8 11 8.9e-06 0.00055 20.1 1.6 1 23 269 291 269 291 0.98 9 11 5.5e-05 0.0033 17.6 2.7 1 23 297 319 297 319 0.99 10 11 1.8e-05 0.0011 19.1 1.6 1 23 325 348 325 348 0.96 11 11 0.0025 0.15 12.4 2.6 1 23 354 378 354 378 0.92
Sequence Information
- Coding Sequence
- CTCTGGTTTATATGGAACTCTGGAAAATGTTGGAATAACAACACACAGACAGTTACCCAAGAAAGTTTTTCATTAATTTTTATCCATAATTTATACTACACTCTTTGTTACAGGCTATCAAAAATGGATACAAAAGCCACTGGGAAATTTAGTATTACCAATTCCAAGAAAAACCATAAGTTAAACACAAACAACAAAAGATACACAGCTTATATTTGTGAGGTGTGCACTGATGCCTTCCAAACAATGAGAGCCCTAAGCCTGCATACACGCTTCCATATTAAGTCCAACGGAGTTATTTTCACTTGTGCTCTCTGCAGGGCTACATTTAAGACTAATGATGAACTGATCAACCACAAGTTAGTCCATGATTTGGAGGACCACTGCTTCATGTGTAAGAAATGCAAGATGGCCTTCACTAACCATCATGATTACCTACAACATAATGCAATACATATAAAACCGCCCCTCTACAAATGCATAGAGTGTTCTTATCCCTTTCACTTGCGGCGGAGTTATAAGAACCACATATCAATACACTACCTCAAGCAACACAAATGTAACTCCTGTCAGGAAACCTTTACACAAAAGAAGGACCTAGCCAAACACAAAACGCGCTACCATCTGCCAGGCATAGATTGTGTCGAGTGCGGAAAGAATTGTCCCACGCGCAGAGACCATGAAGAACATATGGTTCATCACACTGGAGTCAAGGTGGTCCAGTGCCTGTATTGCGGTGAAGGTTTCTCTAAACATATGGGAAGGCGTGTGCATACGAGGAAAATGCACACAAAGTTCTTTCCCCATGAATGTACAGTATGTTCAGAAAGATTTCAAACCTCAGCGCAATTGAAATCTCATATGATAACACACGACACAGAGAAGAAGTATGAATGTAATGATTGTGGCCAGCAGTTCTTCCACAGGAATAGCATGATACAACATGTAAGGCGGCATATGAACTACATGCTGTACAAGTGTCCTATGTGCGAACGCTCATACACCACATACCAGAATCTATGTGAACACACAGAGGTCGCTCACGTGAAGATCAGGAGGTATAAATGTGAACTGTGTAACATCTCTTTTGTACTCAAAAAATCTTTACATGAACATTTTAACACTACCAGTCATCGGAATAAAG
- Protein Sequence
- LWFIWNSGKCWNNNTQTVTQESFSLIFIHNLYYTLCYRLSKMDTKATGKFSITNSKKNHKLNTNNKRYTAYICEVCTDAFQTMRALSLHTRFHIKSNGVIFTCALCRATFKTNDELINHKLVHDLEDHCFMCKKCKMAFTNHHDYLQHNAIHIKPPLYKCIECSYPFHLRRSYKNHISIHYLKQHKCNSCQETFTQKKDLAKHKTRYHLPGIDCVECGKNCPTRRDHEEHMVHHTGVKVVQCLYCGEGFSKHMGRRVHTRKMHTKFFPHECTVCSERFQTSAQLKSHMITHDTEKKYECNDCGQQFFHRNSMIQHVRRHMNYMLYKCPMCERSYTTYQNLCEHTEVAHVKIRRYKCELCNISFVLKKSLHEHFNTTSHRNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -