Pgla014906.1
Basic Information
- Insect
- Papilio glaucus
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:9005-18453[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9e-05 0.0012 19.0 1.4 1 23 234 256 234 256 0.99 2 12 0.002 0.12 12.7 0.5 1 23 263 286 263 286 0.93 3 12 8.5 5.2e+02 1.2 6.7 1 23 290 312 290 312 0.96 4 12 6.2e-05 0.0038 17.4 1.3 1 23 317 340 317 340 0.98 5 12 0.25 15 6.1 1.3 1 23 343 366 343 366 0.95 6 12 0.72 44 4.6 0.1 2 21 416 438 415 439 0.72 7 12 0.0059 0.36 11.2 0.3 3 23 456 477 455 477 0.97 8 12 0.0012 0.073 13.4 2.6 2 21 487 506 486 508 0.94 9 12 0.00032 0.02 15.2 0.1 1 23 514 536 514 536 0.98 10 12 4.7e-07 2.9e-05 24.1 2.6 1 23 542 564 542 564 0.98 11 12 3.6e-05 0.0022 18.2 2.4 1 22 570 591 570 591 0.96 12 12 0.18 11 6.5 0.4 8 23 591 607 590 607 0.94
Sequence Information
- Coding Sequence
- ATGTTAACTACTGAAATTTGTAGAATATGTTTGAATATGAACGTTCCTATGTTTACACTGAAGAACACTACTCTTCAAAATTTATACGATACACTGACAAATGGATACATGAATACTGCTAATGGTAATCCTGTAATGGCTTGTTTTATCTGCTATGCAAGACTTAAGAGATGCAGAAGATTTCAACAGCAGGCATTGAAATCTAATGAACTTCTAGGACAGTTAGCAGAAGAACATAAGCTTCTGCAATTGGTTGAATCTCATAAGATAAATGGAGCAGGGGAACATTTTAACTTCACACCTGTCTATCATCTTCACTTGGAACCAATAATTGATAATCAGGTGGAAGATGATTGTAAGCTAAAGGTCAATAGCTTTATTTCAACAGTGGTTAAAGATGAAGCAAAGAATGAAGGAGAGGAAGGAGATGGGATAGATAAACAAGATTTTGCTAGTAGTACTACAGACATTGACTTTGATACTTTTCAAGACAAACAAACGGATTCTGAAGATGACCTGCCACTGATTGCTATTGGTTCTAATAAAAAGACGGTAACAAACTTAGAAGGATTTAAAAAGCGGAGAAATAAAGAAGAAAAAGATTTTCTAGTGGATGCCAAAGAAATAGAATTGACAGAAGAAGAGCAAAGATTAGAATTGTTGCAGCGAGCCAGTTCAGAGAATTACTTGAATTCACCGTACAAGTGTGAGAAATGCTACAAAGGCTTCGTCGATCCTCAGGCCTTCAATAATCACACGAGGAAACATGATCAGAGTAGCGGTCCCCACGAGTGTGGTGTTTGCCGTCTGAGGTACACCAGCAGCAGGCAGCTGCGCGCGCACGTGGTGTCTGCGCACGCGCGCAGGTACTCCTGCACCAAGTGTCCCCACCGATCTCATACCAGGCACCAAGCAAGAGATCATGAGAAGTGGCACAACGGACACACGTATCCTTGTCGGATATGCGGACAGAAGTTTCAGAAGCCCACATCATACCTGACACATATGCGTAAGAATCATTCGGAGCATGTGTGCGTGCGCTGCGGTGACAGCTTTGTGGGCCGGCATGGTCTCCTCATGCACCTCAGCAAGACTCATAAACGTGACGAAACGGAGAAAGGTAATCCGGAAGAGGCTGCTGTGGACCGATTCTGTAGGGACTGTAACATTCAATTCCTGACAATCAATGCCTGGAAGAAACACGTTCTAACTTCCTTCAAGCATACAATGCGGACAGGAAGCAGTACGTGCGATATTTGCGGGGAGCAGGTGACATCATTGAGTCGGGGCTCGCATATGCGCGGGCACATGCGGGAGCTCCGCCCCCACGTGCAAGCAGCGCCCGTGGCCACGCCTGCTCTCCTCTGCGGACAGTGCGACGCGCAGTTCATGACGCGGTCTCGGCTGCAGGCGCACGTTAAGCGAGTGCACCTCGGCCTCAAGTACAACAAGAACGTAGTCTGCGAGATGTGCGGCAAGAAGTGCACGTCGGCGGCTGCACTGCGTTACCACCAGCGTTGTCACACGGGCGAGCGGCCGTACGCGTGCGGGCAATGCCCCGCCCGGTTCGCGCAGCGCGGCCGCCTGCGCGTACACGCCCGCACGCACTCCGGCGACCGCCCCTATGCCTGCCACACCTGCGACAAGCGCTTCACACAGAAACCCGCGCTCAATAGACACTACAGGGTGCACTCCGGCGCCAGACCCTACGCCTGCACACAATGCTCGAAGTGCTTCAGCCAGTCCAACTCGCTCAAGTTGCACGTACGCACGTGCTTCATCCAATCCAACTCGCTCAAGCTGCACGTACGCACGGTTCACCTCAAGCTGCCGCACGTCAGGAAGTCGGACAAGAAGCAGGAGACCGGGCCGGAATAA
- Protein Sequence
- MLTTEICRICLNMNVPMFTLKNTTLQNLYDTLTNGYMNTANGNPVMACFICYARLKRCRRFQQQALKSNELLGQLAEEHKLLQLVESHKINGAGEHFNFTPVYHLHLEPIIDNQVEDDCKLKVNSFISTVVKDEAKNEGEEGDGIDKQDFASSTTDIDFDTFQDKQTDSEDDLPLIAIGSNKKTVTNLEGFKKRRNKEEKDFLVDAKEIELTEEEQRLELLQRASSENYLNSPYKCEKCYKGFVDPQAFNNHTRKHDQSSGPHECGVCRLRYTSSRQLRAHVVSAHARRYSCTKCPHRSHTRHQARDHEKWHNGHTYPCRICGQKFQKPTSYLTHMRKNHSEHVCVRCGDSFVGRHGLLMHLSKTHKRDETEKGNPEEAAVDRFCRDCNIQFLTINAWKKHVLTSFKHTMRTGSSTCDICGEQVTSLSRGSHMRGHMRELRPHVQAAPVATPALLCGQCDAQFMTRSRLQAHVKRVHLGLKYNKNVVCEMCGKKCTSAAALRYHQRCHTGERPYACGQCPARFAQRGRLRVHARTHSGDRPYACHTCDKRFTQKPALNRHYRVHSGARPYACTQCSKCFSQSNSLKLHVRTCFIQSNSLKLHVRTVHLKLPHVRKSDKKQETGPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141916;
- 90% Identity
- -
- 80% Identity
- -