Pgla008749.1
Basic Information
- Insect
- Papilio glaucus
- Gene Symbol
- ZBTB47
- Assembly
- None
- Location
- scaffold:33767-42919[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00028 0.017 15.4 0.1 2 23 202 223 201 223 0.96 2 12 9.4e-05 0.0057 16.8 7.4 1 23 229 252 229 252 0.96 3 12 0.001 0.061 13.6 0.1 1 23 267 289 267 289 0.98 4 12 0.0005 0.031 14.6 3.5 1 23 587 609 587 609 0.98 5 12 0.0074 0.45 10.9 1.3 3 23 616 637 614 637 0.96 6 12 0.0008 0.049 13.9 1.1 2 23 646 667 645 667 0.97 7 12 2.8e-05 0.0017 18.5 0.8 2 23 671 692 671 692 0.97 8 12 0.032 2 8.9 0.7 2 23 706 728 705 728 0.96 9 12 2.8e-05 0.0017 18.5 2.5 1 23 734 756 734 756 0.97 10 12 0.038 2.3 8.6 4.2 2 23 763 784 763 784 0.97 11 12 0.0084 0.51 10.7 3.6 1 23 790 813 790 813 0.96 12 12 0.0008 0.049 13.9 1.6 2 23 818 840 817 840 0.94
Sequence Information
- Coding Sequence
- ATGGAGCCAAAACTAACAAACACGGCGGGCCTAAAAACATATTCTCGCTCGAAATGTTGGAAAGTATTGAATCCTAAAGTTATTAAAAGTGAACCTCTGACAACAAAAGAAGCTGTGAAGTATTTGTTGCAGGGTTCACTGAAGAGGAGGGTTTGTCGGTTTTGCTTGACTGCAACGACCTCTTTGTCGGAATTGGACGAGATTTTTGAAGTAGCCAGTTCCGGCGCAATCTTTCAAGTGACTATAAGGGATATGATAGCAAGTTTCTACCCTTTTCAGGTAGCGGATGACCCCAATTTTCCAAGTAAAGTCTGCGGTAAATGTCTTGATAGAACCATTAATTGTTATTTATTTACACAGCAATGTGAACGAGCTGAACGTGCATTACGTAACTGCCTTATTGATATTAATGATAAATTTGATAAACTAGATCCTATTGAAAGAGTCAAGAAAAGGGGACGACAAAAGTTAAATCCCAACTATAATATATTACATGTAGAACATAAAAAAGTCATTAACTATGCAGAGCCAATAATAAATATTGTGAATGTTGGTTCATCGCTAGAGACTAGTGATGAAGGCATCAACATAATTAATGAATTAGAATGTCCGAAGTGTTGGCAAGTGTTCACCAATATAGAATCTCTTCTTAACCATGAAAAAATCCATCCAAAATCAATGTGGTACAATTGCAGACTCTGTGGCAAGTCTTTTGTGAAACATTCCCATTACAAAAAGCATATGAAACTATTTCATCTAAAAGGAAAAAAATCCGAAATAAGTACAGACAAACAACACTTTCAATGCAATGAATGTGGGACAGTTACTGAAGAGTTGGAGAATTATTTACAACATATTGAAAAGCACAAGTTTAAAAATGTGTTAGAGCATTTAGTTGAGAAGAAAATGGATAGTTTGTGTGGAGTTTGCTTGGACAAAAGTGATGGCATGGTGGAGTTGAATGAAACTTTATGTTTACATGGAGGATATCCAGAATTATCTGGAGAGATGACTATGGCTACAGTTTTAACTGCAACTATTCCAGAGATGAACACAGTTCATAACTACGCCGGGACAAAAATTTGCGAAAAATGCTTTAATCATGCATTAACATCATATATTTTTATAAATAAGATTAGATACATAAGAAGTAGACTGAATACTTGTATAAGTCTCATGTTAGAAAGTCTGAATCGGATCGACGAGCCCGAAAACAATGTAATGGTAGAAATAGCAATGGATACGATCCTGCCTATAATGGAAAAGGATGTCGTGGATGAAGACATTGAGGACGATGAAGATATTGATGAATCACAGTTAAAAATCGAAGTATTGGAAGATGAATTTAGAATAGAATCGGAAAGTTCTGAAGAAGAAAGCGTGAAATCTGATGATGCGGATGATGAAGTTAAAGGGGAGGTGATATTTGACGATTTAAAGAAGATGCTTTATCCAGTCACGAAATGTGACAATATGAATGATGTACCTACGGAAGAAATGAAAACGGACGTAAATAGGAAAATGGTGAATGGATATCAGACAATGATTACATTTAATGATGAAGCATTGTCTCCGTCAGTAAATGATGTAGAAAAATCACCAAGAATGAGTGATGTAGAAAAATCACCAATTGTAAGTGACGTAATAAAATCTTCAGCAATAAGTGACGTGGTGGAATCTGCACCGGTTAGTGACATCTGCAGTGAATTCCTAACGTTTAAAAAGAAACCAAAACCTAAAAGAAAGCTGAAACCGAATTTTACATGTCCATTCTGTAGTAAACATTTTATCACGGATTATTTCCTCCAGAATCATATATTGAAACATGTTAATTCAAAAATTAACTGTAGGATTTGCTTGGAAGTGTTAAAATCCAAATTCCATCTATTCGAACACATGAAGATGGTTCATATAGATCACCATAAAGACTATAGTGTTTGTGACACATGCGGTAGAAGTTTTGCGGACACCAAAAAGTTTTTAATGCATAAACAAACACATGTAATCAACGAGTGTCCTATATGCGACAAGCTATTTACATCTCAGAGCAGTTTCGAAAGTCATTTCCAAAGGCACGCGGTCAAATTCAATGAACGCAAGACATCAACATCGCAAACATGCAGTTTCTGCGAGAATAACTTTTCAAACGAAAATGAACTTTCTCTACATGTGAATAAGTTACATTTGCAAATAAAGCCGTACAGTTGTGACATGTGCGATAAGAGGTTCTATACAGAGTACAACTTGAGCAGCCACAAGAAGTTGCATGGTTGCCGATCGAAGGAGACTTGTGAATTTTGCAGTAAAGTGTTCAAGTGTCGCAGAGATTTGGTTACTCATGTGAGGAAGCATATAGGCTCCAAACCTCATAATTGTCAAATCTGCAGACAATCTTTCTACTCAGAAACGAGTCAACAAAACCACATGAAGAAAGTGCACGGTGGCAGGTTGTGCTGTAGACTCTGCAAGTCAGTGTTTAACAGGAAAACGGACCTTAAAGCACATATTAATGTGGCTCATAACGCTATGTAG
- Protein Sequence
- MEPKLTNTAGLKTYSRSKCWKVLNPKVIKSEPLTTKEAVKYLLQGSLKRRVCRFCLTATTSLSELDEIFEVASSGAIFQVTIRDMIASFYPFQVADDPNFPSKVCGKCLDRTINCYLFTQQCERAERALRNCLIDINDKFDKLDPIERVKKRGRQKLNPNYNILHVEHKKVINYAEPIINIVNVGSSLETSDEGINIINELECPKCWQVFTNIESLLNHEKIHPKSMWYNCRLCGKSFVKHSHYKKHMKLFHLKGKKSEISTDKQHFQCNECGTVTEELENYLQHIEKHKFKNVLEHLVEKKMDSLCGVCLDKSDGMVELNETLCLHGGYPELSGEMTMATVLTATIPEMNTVHNYAGTKICEKCFNHALTSYIFINKIRYIRSRLNTCISLMLESLNRIDEPENNVMVEIAMDTILPIMEKDVVDEDIEDDEDIDESQLKIEVLEDEFRIESESSEEESVKSDDADDEVKGEVIFDDLKKMLYPVTKCDNMNDVPTEEMKTDVNRKMVNGYQTMITFNDEALSPSVNDVEKSPRMSDVEKSPIVSDVIKSSAISDVVESAPVSDICSEFLTFKKKPKPKRKLKPNFTCPFCSKHFITDYFLQNHILKHVNSKINCRICLEVLKSKFHLFEHMKMVHIDHHKDYSVCDTCGRSFADTKKFLMHKQTHVINECPICDKLFTSQSSFESHFQRHAVKFNERKTSTSQTCSFCENNFSNENELSLHVNKLHLQIKPYSCDMCDKRFYTEYNLSSHKKLHGCRSKETCEFCSKVFKCRRDLVTHVRKHIGSKPHNCQICRQSFYSETSQQNHMKKVHGGRLCCRLCKSVFNRKTDLKAHINVAHNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -