Pgla008694.1
Basic Information
- Insect
- Papilio glaucus
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:60336-66599[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7e-05 0.0043 17.3 0.3 1 23 276 299 276 299 0.96 2 10 0.18 11 6.5 1.1 2 23 325 347 324 347 0.93 3 10 0.0014 0.087 13.1 1.1 1 23 370 392 370 392 0.98 4 10 2e-05 0.0012 18.9 5.3 1 23 396 418 396 418 0.98 5 10 0.017 1 9.8 5.5 1 23 423 446 423 446 0.89 6 10 0.00046 0.028 14.7 0.5 3 23 455 476 453 476 0.95 7 10 3.6e-06 0.00022 21.3 1.4 1 23 482 505 482 505 0.98 8 10 2.3e-05 0.0014 18.8 2.6 2 23 512 533 511 533 0.96 9 10 3.1e-07 1.9e-05 24.7 2.0 1 23 539 561 539 561 0.97 10 10 1.2e-05 0.00073 19.7 1.8 1 23 567 590 567 590 0.97
Sequence Information
- Coding Sequence
- ATGGACTCGAATAAAATATGCCGGTGCTGTTTGGCCGTAGGTCTTCATAAAGATCTAAACTCGCCATATAGCTGGTTAGAGAATAAGGAGATATATTCAGATATGTTATTGGAGTGTTTCAATATAGTATTGTCCACAGACAAAACTTGCAACATGATCTGTGATGCATGCATCACCAGCCTGCGTAGCTCACTTATTTTCAAGCGGCAGGTTCACAGAGCTGAACAGGATTTCATCAAGTGGATGAAGGACAAAAGAGAAACAGATGAGACAACAGAAGTTAAAGAAGAACCAAAACTGGAGAATGACGGCAATGAGTCGGACAATTATGTCTTGTGTGTTTCAGACAAGGAAACCTCAAAGCAAATGAAACACAATACTGAGGAGCTACCAAAGCGCAGAGTTAAGTTGACAAGCAAGAAAGAGACAAAAGATGTTGACAGTTTGGAGACTAATGTCAAAGCGGAGCCCAACCCGGACATCGATGGAGAGGACTCGGACAATTACTTCTTAGGTGAAACGGTAATTCGCAGAGTGAAGAAGAAAGCGACAGAGGATGTGAATTGGCGAAGTAAGAAAATCAAGACAATTGTGAATAGATTCACCAGCTCCGTCAATTTATGTGACATCACAGATATCAAATTGAAAAAAGAGATTATAAAAAACAGTATCAGTAAACTACCAATATCCGGTCAGAACAAAACAAAGATCAATCTCACGTGGACGTCCCGAGGGAGCAGCGACAAAGCCAAGCACATAGAGAACTTGCAGACCATCCTCCAGCATTGTAACGCCACCCCATTCAAGGATAAATCCCTGCTCGGTTATACATGTGGCTACTGTGATGAAACATACCAAGATCCCGTGGACCTCAGGAATCATACCAAAGAAAACCATCAAAATAAATGCTTGGAGTTCAAATCTTATTTTGATATGACAGAATGCAACGTCAAGTTAGATATAACTAACTTAATTTGCTCTCTATGTCATCAAGATATGAATAATCTATCAGATTTAAAGACCCATCTAGTTAAATATCACGAAAAGATAATTCATACGGACATAAAAGATCATATACTGCAGTTTAAGTTGAGAAAAGGTGACGTGTACGACTGCGCCATGTGCACCGCCACGTACGAAACCTTTAAGATGCTAAAACAACATATGAACAAGCACTATAGTAATTATACATGCAGCAAATGTCATACATCCTTCGCAACCAAACGTTCTTTAAGGTCACACAGAAAAATCCACCAGGAGGGTAGCTTCAAATGCGACCATTGTGACAAAATCTTCTCGAGTCAAGCCAAGAAGGTGTACCACGAGAAGCATAAACACTTGGGCGAAAGGAAAATCAGCAACTGTCCGTACTGTGACCAACCGTTCCGCAGCTACTATCAAAGGAATCAACATTTGATAAAAATACACAACGCGGAGGCTCAATACAAATGCAACGTCTGCTCCAAATCATTCATCCTGAAATCTCTGTTAATGTCGCACATAAAAAAAAATCATCTAATGGAAAGGAACTGTCAGTGTACCGAATGCGGGTACAGATTCTTCAGTAACAAAGCGCTCAAAGCCCACATGGTGAAGCATACTGGCAAGAAGATATTCGCCTGTGAAATTTGCCACAAGTCGTACGCGAGGAAGTACACCCTCAGGGAGCACATGAGAATACACAATAACGATAGGAGGTTCAAATGTGAGGTCTGTGGAGTCTCGTTTGTACAGAAGTGCAGTTTGAAGAGCCATCTTCTTTCCAATCACGCCATCAGTGTGGCAGCAACTGACATAACTTCAACCTAA
- Protein Sequence
- MDSNKICRCCLAVGLHKDLNSPYSWLENKEIYSDMLLECFNIVLSTDKTCNMICDACITSLRSSLIFKRQVHRAEQDFIKWMKDKRETDETTEVKEEPKLENDGNESDNYVLCVSDKETSKQMKHNTEELPKRRVKLTSKKETKDVDSLETNVKAEPNPDIDGEDSDNYFLGETVIRRVKKKATEDVNWRSKKIKTIVNRFTSSVNLCDITDIKLKKEIIKNSISKLPISGQNKTKINLTWTSRGSSDKAKHIENLQTILQHCNATPFKDKSLLGYTCGYCDETYQDPVDLRNHTKENHQNKCLEFKSYFDMTECNVKLDITNLICSLCHQDMNNLSDLKTHLVKYHEKIIHTDIKDHILQFKLRKGDVYDCAMCTATYETFKMLKQHMNKHYSNYTCSKCHTSFATKRSLRSHRKIHQEGSFKCDHCDKIFSSQAKKVYHEKHKHLGERKISNCPYCDQPFRSYYQRNQHLIKIHNAEAQYKCNVCSKSFILKSLLMSHIKKNHLMERNCQCTECGYRFFSNKALKAHMVKHTGKKIFACEICHKSYARKYTLREHMRIHNNDRRFKCEVCGVSFVQKCSLKSHLLSNHAISVAATDITST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -