Pgla002859.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio glaucus
Gene Symbol
Dus4l
Assembly
None
Location
scaffold:423714-437076[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 8.7e-06 0.00053 20.1 0.8 2 23 791 812 790 812 0.97
2 8 5.4e-05 0.0033 17.6 2.4 1 23 818 840 818 840 0.98
3 8 2.7e-06 0.00017 21.7 0.3 2 23 849 870 848 870 0.97
4 8 7.3e-06 0.00044 20.3 0.7 1 23 876 898 876 898 0.99
5 8 2.4e-07 1.5e-05 25.0 1.8 1 23 904 926 904 926 0.98
6 8 1.4e-06 8.4e-05 22.6 1.2 1 23 932 954 932 954 0.97
7 8 0.00011 0.0065 16.7 7.2 1 23 960 982 960 982 0.97
8 8 7.4e-05 0.0045 17.2 0.9 1 21 988 1008 988 1009 0.95

Sequence Information

Coding Sequence
ATGAAGATTAAAAACGATATCACAAAGTTATTTATTACTGCTAAGGCTAACCAAAACTATTTAAATGTTTGTGGACCCATGGTTAGATACAGTAAAGTTCAATTTCGAACACTTGTGAGAAATTATGATACAGATTTGACATTCACACCCATGATCTTAGCTGATTCATTTTGTCAGAATGGTAAAGCTCGTTCAAATGAATTTACAACAACTATAGATGATTCTCCTCTGATTGTACAATTTGCTGCTAATAATATAAATGATTTTGTGGATGCCTCTAAACTGGTGTATCCCTATGCAGATGGAGTAGATTTAAATTGTGGCTGTCCCCAGAGGTGGGCAATGAAGGATGGTTATGGTTGTGCATTGTTGTCTAAACCAGAAGTGGTCCATGAATTGGTGAAAGGTGTCAAAAATAGCCTTCCTTCTAATTTCAGTGTATCAATTAAGATAAGAATATTAGAAGATCTAAAAAAAACTATAGCATTATGTCAACAGTTGGAAAAATGTGGTGCCACATTTCTAACAGTACATGGACGCACTCCTGCTCAGAAGAGTGGTGAAAATATTGACACATATGCATTGAGAACTGTTTGTGATTCAGTTACCCTACCTGTGATTGTAAATGGGGGTATAAAAACATTAGCTGAAGCAGATGACTTGCATGACCTGACCAACTGTAATGGTGTAATGGCAGCAAGTGGATTGTTGGTCAACCCGGCTCTTTTTAGTGGAGCCAAAACAACTCCAGCCAACTGTGTTAAATTATGGATGGATATTAAAAATACATATAAAGATAAAATAACATTTCAGTGTTACCACCATCATTTAGTTTTTATGCTTGAAAAAGTGCTGACTAGACAACAGAAGCAAATTTTCAATAACTTAAGTACATTTGAAAGTGTTGATCAGTTTTTAACATCCAACTTGTTACCTCTGTGTGAGTGGGACATACCTTTGAAATCTAGAATCAGTGACTTTGTTGAATGTAAATATGCAGATGAAATTACAATGAAACACTCAAGTAAATGTAGAACCTGTGGTAAAAGTATGTGCGAGTGGCTGTCGTGCGCCGAGTGGTGCGATGTCCGGTTGTTGTGTGGCGGCCACAGTTTCAGCGCACACCGCGCCGTCCTTGCCAGTGTTAGCACGTATCTTAGAGAAGTACTTCTCTCATGTCCAACAAAAGATTCGCCAGCGTATATTATCTTGCCAGATTTTGATCTCGATGCTGTGGCATCCGTTTTATACTATGTATATCATGGGGAGGTTGTTATTCAAAGAAGTCAGCTTAACAAATTTTTAGACATCATCCGAAATTTGAAGATTTATATAGATCCTCAATATTTGTTTAAAATTAGTAATGATATAGAAAAGTCCCACTTAGATCTTAGCAGTTACATGTATCAAGAAAATAATGTGTCGAAGAATGATGACATCATATCTTTGGATGCAAATAGTGAATGCCGGCAATATGCTAATATAAAGAAAGACATCGAAAATATTGTGTGTAAAGTACAATGTTCGTTCGATGGTTTAGATTTTGGAGATAAACAGATCCGGCGTACTCGGAGTGAAAAGTTCAGCCCATCTGCTAGAGATGTTGTAGCGCGATGCGAAGACCGACAAAGAGGCTCGTTGCTACGTGATTTATTTATTGAGACATATGCTCGGAACGGTAATGGTAACGGTCTGGGGGCAGGCGTGCCGGCAATATCTAATGAGCACTATCGTGGAATAACATCTGTTCTTTTCACGAATGCTAATGCCAGCCATCCTAACGACACACTCGCTGAGACACACAAGATATTACCTGAACTTAGAACATATATATCACCACCGTCCAACAGAGCTCTGCTGTCATATGAAGGATATCTTTCTCTAAACAACTATACGTCGGAATCGTTTATCAAATCATTCATAGAAGCTAATAGAATTGGGTCAGAAAGTTCCCCTCTAGACTTAAGCATGTCAATTTCCGATACTAACGCTGTAGATTGTGTATTTGAGAAGAAGAAATGCGTGACGAGTAATTCTTTGATGAAAGAATGTAATGAACAAGTAATTACAACTACTAATAATAATGAAAAGGATTTAAATTCAAAAACAGCACTGGTAAAAGAAGTTTTGGAGAGCCCCTGGGCTCCGCGGTTACCTTATTACTATAAACCATTTCGTAGAAAAACTACTGAAACCATTCAAGTAAATTCTGTGAAGAATCATCTCGATACGGGTAATGATAAAAACAATATCATAAACCAATTAATAGCTCCTTTGGTCACGACTGAAGATACCAAAAACAATTCTAATAGTGAAATTAGAGATGCACCAACATCACGTTCGCGTCGTCTAAGCGCTATCAGCGACTTGAAATGCACAACTTGTAATCAGGTGTTCACAAGTGAGGAATCTTTCGCTGCACATATGCGCCGGCATTCGTCTTTGACCCGCTACAGCTGCGTAGAGTGTTACAAAACATTTTCACAGCTTCGTAACTTCAAATATCACATGTCGGTGCATCGCGGAACTAAGGAATTTGCGACTACTTGCCCCGTCTGCGGGAAATATTTTAATGATAGAGGATATTTGAGTAGTCATATGAAAATTCACAGGAATCGAAAGGAATACAAGTGTTCAATGTGTCCAAAGTCATTCAACCAGCGAGTGGCCTACAACATGCACGTGAGGATCCATACAGGCGTGAAGCCCCACGTGTGTGCAGAGTGCGGCAAGGCGTTCTCACGGAAGATGCTGTTGAAGCAGCACCAGCGCACACACTCGGGCGAGCGGCCCTACGCCTGCCCGCATTGCGACAGGCGCTTTGCGGACCGCTCCAACATGACCCTACATCTGAGACTACATACTGGAGTCAAACCCTTCTCATGCTCGCTGTGCCCCAAATCGTTTACAAAGAAGCATCACCTGAAGTCCCACCTGAACTTCCATACCGGCGCCAAGCCGTACTCGTGCCCCAGATGTAAGCTCGCCTTCACTCAGTCTTCGAATATGAGAACCCACCTCAAGAAATGCAATGCGCCTGATGCGATTCTTACGTCTGACGCCACTTCTTAA
Protein Sequence
MKIKNDITKLFITAKANQNYLNVCGPMVRYSKVQFRTLVRNYDTDLTFTPMILADSFCQNGKARSNEFTTTIDDSPLIVQFAANNINDFVDASKLVYPYADGVDLNCGCPQRWAMKDGYGCALLSKPEVVHELVKGVKNSLPSNFSVSIKIRILEDLKKTIALCQQLEKCGATFLTVHGRTPAQKSGENIDTYALRTVCDSVTLPVIVNGGIKTLAEADDLHDLTNCNGVMAASGLLVNPALFSGAKTTPANCVKLWMDIKNTYKDKITFQCYHHHLVFMLEKVLTRQQKQIFNNLSTFESVDQFLTSNLLPLCEWDIPLKSRISDFVECKYADEITMKHSSKCRTCGKSMCEWLSCAEWCDVRLLCGGHSFSAHRAVLASVSTYLREVLLSCPTKDSPAYIILPDFDLDAVASVLYYVYHGEVVIQRSQLNKFLDIIRNLKIYIDPQYLFKISNDIEKSHLDLSSYMYQENNVSKNDDIISLDANSECRQYANIKKDIENIVCKVQCSFDGLDFGDKQIRRTRSEKFSPSARDVVARCEDRQRGSLLRDLFIETYARNGNGNGLGAGVPAISNEHYRGITSVLFTNANASHPNDTLAETHKILPELRTYISPPSNRALLSYEGYLSLNNYTSESFIKSFIEANRIGSESSPLDLSMSISDTNAVDCVFEKKKCVTSNSLMKECNEQVITTTNNNEKDLNSKTALVKEVLESPWAPRLPYYYKPFRRKTTETIQVNSVKNHLDTGNDKNNIINQLIAPLVTTEDTKNNSNSEIRDAPTSRSRRLSAISDLKCTTCNQVFTSEESFAAHMRRHSSLTRYSCVECYKTFSQLRNFKYHMSVHRGTKEFATTCPVCGKYFNDRGYLSSHMKIHRNRKEYKCSMCPKSFNQRVAYNMHVRIHTGVKPHVCAECGKAFSRKMLLKQHQRTHSGERPYACPHCDRRFADRSNMTLHLRLHTGVKPFSCSLCPKSFTKKHHLKSHLNFHTGAKPYSCPRCKLAFTQSSNMRTHLKKCNAPDAILTSDATS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01143232;
90% Identity
iTF_01143232;
80% Identity
iTF_01143232;