Pgla003802.1
Basic Information
- Insect
- Papilio glaucus
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:46759-51048[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.007 0.43 11.0 3.2 3 23 144 165 143 165 0.97 2 18 2.2e-05 0.0014 18.8 1.6 1 23 174 197 174 197 0.96 3 18 0.013 0.77 10.1 0.8 2 23 210 232 210 232 0.97 4 18 0.00026 0.016 15.4 1.4 1 23 241 264 241 264 0.97 5 18 4.3e-05 0.0027 17.9 1.2 1 23 276 299 276 299 0.97 6 18 3.7e-05 0.0023 18.1 0.8 3 23 330 351 329 351 0.97 7 18 0.0003 0.018 15.3 1.3 2 23 361 383 360 383 0.96 8 18 0.013 0.77 10.1 0.6 2 20 388 406 387 408 0.92 9 18 2.5e-05 0.0016 18.6 0.1 2 23 413 435 412 435 0.96 10 18 0.26 16 6.0 2.2 3 23 445 466 444 466 0.93 11 18 0.0015 0.093 13.0 5.1 1 23 471 494 471 494 0.93 12 18 0.00027 0.016 15.4 0.4 3 23 507 528 505 528 0.96 13 18 3.5e-05 0.0022 18.2 0.6 1 23 553 576 553 576 0.92 14 18 0.059 3.6 8.0 0.1 2 23 583 604 582 604 0.95 15 18 1 62 4.2 1.2 2 23 611 632 610 632 0.95 16 18 3.4 2.1e+02 2.5 0.8 3 23 640 662 638 662 0.90 17 18 0.021 1.3 9.4 0.1 1 23 698 720 698 720 0.96 18 18 0.14 8.3 6.9 2.0 1 23 726 749 726 749 0.96
Sequence Information
- Coding Sequence
- ATGGCTCAATCAAATGCTGTGGAAGACTTATCCATGAAAAGACAAGACCCTACATCATTCTTGCCGGAAGAGCCCATGACATATGAATTGAAACCAAAAAAGAAAAAGAAAAAAAAGAAACAAAACCAGGAAGATCCATTTAAGGATATAGAGGATGCATCTAATTTATCCACAGAAATAGCCCTCGATCCAGAGGTGACTATTAAAGTGGAGAGTATTGAGGTAGAGTTGGATTTTAATGATTTTACCAATGATAATGGACTTATGGTGGAAGGTGCTCAGAGTGAGGATAGTCAGGAACCTGTAGTTAAACTTGATCAACAAAATCGGGAAGCTGTAATTTTAACTTTTGAAAGTGTAGTCAGTGATAAAACAGTCTTTAGTTATAATCAACCAAGTGAGACAAATCGTATAGGACCTACCAATATATGTAAAATTTGCCATCTAGTGTTTCAATCCGTCAAAACTCTAAAAATGCACCAGAAGAGAAAACACAAAGTGTTCAGACGGTCATTTAAACACATTTGTGATCACTGCGGAATGGCCTATGAACAGAAGACCAGTTTGATTGCACATATTCGAAGAAAACACGGACCAAACGCTCCGCCCGAAGATAGAGAAGAAAGGACATGTGATATCTGTGCACTGGTTTTTAAAGGTATGACAAGATTACGTATGCATATGCGAAGAAAGCATGGGGCCTTCGAAGAATCTTTTCGACACGTCTGCAAAGACTGCGGACTTACCTATGATAAATATAGAAGTTTAATAGTACATATACAGAGAAAGCATACATTAGATAAGAAACCTGTCGTCGATCAATGGTATAACTGTCCATTTTGCCCAAAAGCTTTTACTAAACGTGAAACTTACGCGAGGCATGTGCAACGGAAACATCAGATCAATGATGAAGACAGTATCCAAGATGAAAATGGTGATCAGGTTTTATTAGAAGGTTGCAAGAATGAACAAACCGGTGAAGTAGCATGCAAAGAATGCCCTCTAATGTTTTCTTCTTTGAATTATCTCAAGCTACACATGAGGAGGAAGCATAATGCTTTAAAAGAAGACTTCAGACTCAAATGTAGAATTTGTAATTTATCGTACGATAAAATTGAAAGCTTGAAGCGGCATATTAGAAGAAAACACGACAAGGGATCATATTGTGAAGTGTGCAATAAACAATTCGATACAAGGGAGTTATATTTAAATCATACGCATGTTAAAATGATCAAGGAGTGCTCAATTTGTGGTTTAATATTCGCCTCGAAAGGCGGCTTGGCGAAACATTTACGTTCTACCCACAAAATCGATACGCCCAAAACCGTATTCTGTAACTTGTGCAACGAAGGATTCCATGATAAAAGACAATTAAAGCCTCATTTTATGAAGGTACATTTAAAAGCGTCATATACATGTCGACATTGTAAGAAGGTCTTTAAAGCCAAAGAGAGTTATCGACGTCACGTTTTATTTAAACATCCTATGAATAATATTACTCACAATCAGTTACAAAACTGTGAGCAGTGCACTCAGACATTTCCGGACGAAGTTGAATTGTGTCGACACATTAACATTGCTCACGGAAAATCGGTGGAAGTTGCAAACACAGATGTAGTTGTAGTTAAGAAAGAAGAAATGGATTTCAAAGAATCATTTCAGTGTACGAAATGCCCTGAATCGTATTCAACTTGGGACGAACTTCGGTTACATTTCGAACAAAACCATCATACTGTTGTAGATACGCAGTGTCAGATATGTGGCCAAATAATACCGAATAATGAACTACAGAAGCACATCAAAGTCGCACACACAAAAGAGACGATATTGCAGTGCAAATACTGCATATTCAAGACTTCGATACGAGCAAGTATGACGCAGCATATGTTGAGACATAAAAACGCAGCCACGTTGAATTGTGACATGGATGGTTGTAAATACAAGACATTCTACGAAGGTGCAATGATGAAACACAAAAAGAAGCATTCGGAGCAAGGTGTAAAGTTACAATGTACTCAGTGCTCCTTCCAAACTATGAACAAATATATCTTGAAGTATCACGAAGAGGCGCACATGACTGGCAAGAAGAAATACGCTTGCGACCAATGCGATTACGCGACGATCTTGCCCGCGAATTTAGTTCAACACAAATACAAACACTCGTCAGAGAAAAGGTTCAAGTGTGAGGTTTGTCCGTTCGCGACCAAGTACAACACTTCGTTGCGGTTTCATGTGAAGAAGAAACATTGTGATCTCCCATCGTTCAGTTAG
- Protein Sequence
- MAQSNAVEDLSMKRQDPTSFLPEEPMTYELKPKKKKKKKKQNQEDPFKDIEDASNLSTEIALDPEVTIKVESIEVELDFNDFTNDNGLMVEGAQSEDSQEPVVKLDQQNREAVILTFESVVSDKTVFSYNQPSETNRIGPTNICKICHLVFQSVKTLKMHQKRKHKVFRRSFKHICDHCGMAYEQKTSLIAHIRRKHGPNAPPEDREERTCDICALVFKGMTRLRMHMRRKHGAFEESFRHVCKDCGLTYDKYRSLIVHIQRKHTLDKKPVVDQWYNCPFCPKAFTKRETYARHVQRKHQINDEDSIQDENGDQVLLEGCKNEQTGEVACKECPLMFSSLNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKGSYCEVCNKQFDTRELYLNHTHVKMIKECSICGLIFASKGGLAKHLRSTHKIDTPKTVFCNLCNEGFHDKRQLKPHFMKVHLKASYTCRHCKKVFKAKESYRRHVLFKHPMNNITHNQLQNCEQCTQTFPDEVELCRHINIAHGKSVEVANTDVVVVKKEEMDFKESFQCTKCPESYSTWDELRLHFEQNHHTVVDTQCQICGQIIPNNELQKHIKVAHTKETILQCKYCIFKTSIRASMTQHMLRHKNAATLNCDMDGCKYKTFYEGAMMKHKKKHSEQGVKLQCTQCSFQTMNKYILKYHEEAHMTGKKKYACDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141847;
- 90% Identity
- iTF_01141847;
- 80% Identity
- -