Pgla004268.1
Basic Information
- Insect
- Papilio glaucus
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:342274-346269[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.1e-05 0.0031 17.7 0.2 1 23 71 94 71 94 0.98 2 13 0.14 8.3 6.9 3.4 2 23 231 252 230 252 0.97 3 13 2.9e-05 0.0018 18.4 3.2 1 23 263 285 263 285 0.98 4 13 0.00076 0.047 14.0 2.8 1 23 293 316 293 316 0.96 5 13 1.3e-05 0.0008 19.5 2.8 1 23 322 344 322 344 0.96 6 13 4.2e-05 0.0026 17.9 7.2 1 23 350 372 350 372 0.98 7 13 2.5e-08 1.5e-06 28.1 1.6 1 23 378 400 378 400 0.96 8 13 1.5 94 3.6 1.3 1 10 406 415 406 416 0.90 9 13 2 1.2e+02 3.2 0.1 9 23 436 450 436 450 0.94 10 13 1.9e-07 1.2e-05 25.3 0.5 1 23 456 478 456 478 0.98 11 13 0.0002 0.012 15.8 0.6 1 23 484 506 484 506 0.98 12 13 5.5e-05 0.0033 17.6 3.4 1 21 512 532 512 534 0.96 13 13 6.3e-06 0.00038 20.5 0.1 1 23 540 562 540 562 0.98
Sequence Information
- Coding Sequence
- ATGGAAAGTGATGATAGGACAATAGCGGAGGTTCTTTCTTTCATATTAAATCTTTACATTTCTGAAAGTGATGCGTATGCAAAACAAGTATGTGGAGAGTGTTATGCTATTATACAAAAGTTTGATCAGTTCAAGAAGCGCTGCATTCAATCGGAAGGCTCTTTAGATGATGCCTATTATGCTGAAAGCAAATTTTGTATGGATGAACCTTATCAGTGCAGTGTTTGTTCTAAGAAATTCTCTGATTTACTTCTCCTAGAATCCCATGTACTAACCGGCCACAGTTTTGCAAATGACCAGGCAATAAAAGATATAAATTTAACTGATGATATCACGCAATATCCGGATTATCCAGAAAATACCTCTCCTTATAATAATAGCGCATTAGAAAATGAAAATGATATTGAATTTAAAGAAACTAAAGATGAAATCAATGAAGACTTTGACTTTGCAGGCAGTGGTGACTTATCAAGTCCATTGATAGATTGTAATACTAAAGATGAAGAGGAAATAACAGAGCAAAAAACAACTCCAAATATTTTTAAGTGTAAATGCGGATCTTCTTACGATAATTATGCTGTATATGAGGAACATATAGAGGAGAATATGTGCCATGAAGTTTTAAATACTATTAAAAAAATTAGGTTGCGTAAGAAAAAAGAGAAAAAAGATGTTGAAAAAGTTAAATCCATGTGTCAAAAATGTAACCTTGAATTTCATACTGTCTATAGATATAAAATGCATCTACGTATGCACAGATTTGAAAATATGGATCCTGCAGATATATTTAATTGTTCTCTTTGTTTGAGACGGTTCACACGGAAGTCATCCTACACTGCACATTTGAAGACTCACGAGATGAAAGCAGGTGTCAAGTTTATATGCAACACATGCAAGAGAGAGTTTCAACACCAGGCCCATTTAGATAACCACATACTGTCAGTGCACACAAGAGAAACAGGCTTCACATGTGACTATTGTTCCAAGAACTTTTCAACACAAGAAAGTCTAAACAACCACCATGAAGCTCATAAAGTGGAAAAGCGACATCAATGCCATGTCTGTAAAAAAGCTTTTTGCATGTTATCAACATTAAAAGATCACATACGGACCCATACGGGGGAGAAACCTTTTTTGTGCTCAGACTGCGGCAAGGGCTTCAGTCAGAAGAACAATTTGACTCAGCACATGCGGCGACACCAAGGATTGAAGTTGTTCAAGTGTGAACATTGTGATCAGAGGTACGGTATTTTAATACATAGGGTCATATCGAATAACAATGATCACATAGAGTTTTATTTCGACAGATTCGTATCAAAAGGCGAGTTGGTAGCTCACAACCGAAAGCATAGCGGCGCGCACCCATTCGTGTGCGACGAGTGTGGTAACAGCTTCACAACGTCCAGCTCTCTAGTCAAGCACCGGCGTATCCACACTGGCGAGAGGCCCTACGCCTGCGACCTTTGCACCATGAAGTTTACAGCATCCGGAACCTTGAAGAACCATCGGCGCATCCACACCGGGGAAAAACCTTACCAGTGCTCGCATTGTGAGAAGGCGTTCGTCCAACGCCAAGACCTGATCTCCCACATCCGCTGTCATACCGGGGAGCGTCCCTTCGTCTGCCCCAACTGCGGCCAGGCGTTCAGGAAGGCCGCCGCCCTCAAAGGCCACCTGAAGATGCACGCGAAAGAGCCTCTACCGATGCAAAAGGATGTAACTATATCAGTTTTACACAATATCGCAGCGCGTCTGTTCAAATGTTACTGGGGATCTGTAGCATATGTCACTCTTGTGTATGTGTTTGTCCCTCTCACTCCAAGTGAGAAAATGCGTTGCGAATATTGTATGAATAATTCACATTCTAAAGAAAATCTTCAAATTAGACACTTTTTGAAAAACACAAACTATAAGTATATGTCCTTGATACTTCCTTTATGA
- Protein Sequence
- MESDDRTIAEVLSFILNLYISESDAYAKQVCGECYAIIQKFDQFKKRCIQSEGSLDDAYYAESKFCMDEPYQCSVCSKKFSDLLLLESHVLTGHSFANDQAIKDINLTDDITQYPDYPENTSPYNNSALENENDIEFKETKDEINEDFDFAGSGDLSSPLIDCNTKDEEEITEQKTTPNIFKCKCGSSYDNYAVYEEHIEENMCHEVLNTIKKIRLRKKKEKKDVEKVKSMCQKCNLEFHTVYRYKMHLRMHRFENMDPADIFNCSLCLRRFTRKSSYTAHLKTHEMKAGVKFICNTCKREFQHQAHLDNHILSVHTRETGFTCDYCSKNFSTQESLNNHHEAHKVEKRHQCHVCKKAFCMLSTLKDHIRTHTGEKPFLCSDCGKGFSQKNNLTQHMRRHQGLKLFKCEHCDQRYGILIHRVISNNNDHIEFYFDRFVSKGELVAHNRKHSGAHPFVCDECGNSFTTSSSLVKHRRIHTGERPYACDLCTMKFTASGTLKNHRRIHTGEKPYQCSHCEKAFVQRQDLISHIRCHTGERPFVCPNCGQAFRKAAALKGHLKMHAKEPLPMQKDVTISVLHNIAARLFKCYWGSVAYVTLVYVFVPLTPSEKMRCEYCMNNSHSKENLQIRHFLKNTNYKYMSLILPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141837;
- 90% Identity
- -
- 80% Identity
- -