Pgla014240.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio glaucus
Gene Symbol
-
Assembly
None
Location
scaffold:29706-40027[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0077 0.47 10.8 0.7 1 23 144 166 144 166 0.97
2 26 0.095 5.8 7.4 5.6 1 23 173 195 173 195 0.95
3 26 0.42 26 5.4 3.9 1 23 201 223 201 223 0.97
4 26 0.0052 0.32 11.4 4.5 2 21 229 248 228 251 0.94
5 26 0.0086 0.52 10.7 0.7 3 23 257 277 255 277 0.94
6 26 0.0051 0.31 11.4 1.9 1 23 283 306 283 306 0.97
7 26 0.021 1.3 9.5 1.5 1 23 312 334 312 334 0.98
8 26 0.00018 0.011 16.0 2.7 1 23 340 362 340 362 0.99
9 26 0.001 0.064 13.5 3.4 1 23 368 391 368 391 0.96
10 26 0.00098 0.06 13.6 1.9 1 23 397 421 397 421 0.93
11 26 0.027 1.6 9.1 1.5 2 23 462 484 461 484 0.96
12 26 2.9e-05 0.0018 18.4 1.6 1 23 490 512 490 512 0.98
13 26 0.00018 0.011 16.0 2.7 1 23 518 540 518 540 0.99
14 26 5.9e-05 0.0036 17.5 1.6 1 23 546 569 546 569 0.96
15 26 0.0081 0.5 10.7 2.6 1 23 575 599 575 599 0.92
16 26 0.64 39 4.8 0.6 1 23 664 686 664 686 0.97
17 26 0.00027 0.016 15.4 0.2 1 23 694 716 694 716 0.97
18 26 0.27 16 6.0 6.4 1 23 723 745 723 745 0.95
19 26 0.31 19 5.8 2.4 1 23 751 773 751 773 0.97
20 26 0.00069 0.042 14.1 2.8 2 23 779 801 778 801 0.95
21 26 0.0018 0.11 12.8 1.1 3 23 807 827 805 827 0.96
22 26 0.00068 0.041 14.1 0.4 1 23 833 856 833 856 0.98
23 26 0.00033 0.02 15.1 1.0 1 23 862 884 862 884 0.99
24 26 0.00013 0.008 16.4 1.0 1 23 890 912 890 912 0.99
25 26 0.00067 0.041 14.2 0.9 1 23 918 941 918 941 0.92
26 26 0.0037 0.23 11.8 1.1 1 23 947 971 947 971 0.92

Sequence Information

Coding Sequence
ATGCAAGAAAAAGCGGAAGATTTATCATCACCAGCGATTAAAAGTTACTATAATACTTTGAAAGAACTCAAAATCGTATTGAATCGTAAAGATTGCCTAATTAAATCGGATGTGATTGGATTAAATAAATATAAGGTACGAAAAAATGTCAACAACCCGAAAAATATTCAAGGTATTGATGATAAAAAGAAGAAATTGAGGACATGGACCAAAGTCTCTTATAAGGATAAAAATACTTTCCAAGATGAAGACAATAGCTATGACAGCAGTACAAACTCTGAAGCATCAGCAGTTAAAGTTAGTCAGCAGTTATACACAAATAATAAAACAGATACAGCATATTGTTGTGAAGTTTGCATGGATACATTCCAAACAATGAAAGCCCTTAACCTGCACTCACGCTTTCACATCAAGTTCAACGGAGGTAAATTCACATGTGCCCTCTGCAGGGACACATTCAAAACGAATAACGAATTGATCAACCACAAGTTAGTCCATGACTCAGAGGACCACTGCTTCATGTGTAAGAAATGCAAGCTGGCCTTCACTAGTCATCATGATTACCTGCAACATAATGCAAGACACGTAAAAACACCACTATACAAATGCATAGAATGTTCTTATACTTTTCACTTGCGCAAGAGTTATAAGAACCACATATCAATTCACTACTTGAAGCAACTCAAATGCAACTTATGTCAGGAAACTTTCACAAAAAGAAATGAGCTCATGAGACATAAAAGATGCTACCACTTACCGGGCATAGACTGTGTTGAGTGCGGAAAGAATTTTTCAACACGAAGAGACCATGAGGAACATATGGTTTCGCACACCGGAGTCAAGGTGTTCCAGTGTTTGTATTGCGGCATGGGTTTCTCAAGACATGGTGGAAAGAGTATTCATACCAGGAAAATGCACACGAAGTTCATTCCTCATGAATGTACGGTGTGTTCAGGACGATATCACAGTACAGCAGCACTAAAAGTACACATGATAACGCACGAGCGGGAAAAGAAGTATGAATGTAATGATTGTGGCCAGCAGTTCTTTCACAGGAATAGCATGATACAACATGTGAGGCGGCATATGAACTACATGCTGTACAAGTGTCCTATGTGCGAATGCTCATACACCACATACCAGAATCTATGTGAACACACAGAGGTCGCTCACGTGAAGATCAGGAGGTATAAATGTGAACTGTGTAATGCCTCCTTTATTCTTAAACGTTTTCTTCGCAAGCATTTGCGATCGAGGAACCATCAGAATAAGTTTTATGCTGGCATAGACAGGAAAAAGTATATTTCCTCTTCCCCGTTAACCCTCTCCTCTTCCCATTCCCATCCTATGGTTATGGTTCATCACACTGGAGTCAAGGTGGTCCAGTGCCTGTATTGCGGTGAAGGTTTCTCTAAACATATGGGAAGGCGTGTGCATACTAGGAAAATGCACACAAAGTTCTTTCCCCATGAATGTACAGTATGTTCAGAAAGATTTCAAACCTCAGCGCAATTGAAATCTCATATGATAACACACGACACAGAGAAGAAGTATGAATGTAATGATTGTGGCCAGCAGTTCTTCCACAGGAATAGCATGATACAACATGTAAGGCGGCATATGAACTACATGCTGTACAAGTGTCCTATGTGCGAACGCTCATACACCACATACCAGAATCTATGTGAACACACAGAGGTCGCTCACGTGAAGATCAGGAGGTATAAATGTGAACTGTGTAACATCTCTTTTGTACTCAAAAAATCTTTACATGAACATTTTAACACTACCAGTCATCGGAATAAAGCTTACGCTGCACACTTACGTTCAATGAATGATGAAAACTGGAATTACCTTTTATCCTTTAAAAATTCCACTTTTTGTTACAGGCTTTCAGAAATGGATTCTAAAACCTCGGAGGATAATGACAATAACAAAACTGATTCTGTGACAAGTCATCAGTTCACAAACAACAATGAAGACACAGCATATATTTGTGAGATGTGCAAGGATACATTCCAATCAATCAGAGCCCTAAGCCTGCACTCACGTTACCACCTCAAGTCCAATGGCCTTAAATTCACATGTGCTCTCTGCGGGGTCACATTTGAAACTAACAGAGAACTGGTAAATCACAAGTTAGTCCATGACTCGGAAGACCGCTGCTTCATGTGTAATAAATGCAAGCTGGCCTACACAAGTCATCATGATTACCTGCGACATAACACAAGACACATGAAAACCCCATTGTACAAATGCATAGAGTGTTCCTACACCTTTCACTTGCTAGGGTCTTACAAGAACCACATATCAATGCACTACCTCAAGCAACTAAAATGTAATTCCTGTCAGGAAATCTTTACACATAAGTACGACCTAGCCAGGCACAAATTACGTTACCATATGCCAGGTACAGATTGTGTCGAATGCGGAAAGAATTGTCCAACGCGCAGAGACTATGTGAAGCATATGATTAACCATACAGGAGTCAAGGTGTTCCAGTGTCTGTATTGCGGTGAAGGCTTCTCGGGACAGAGTGCAAGGAGTGTCCATACAAGGAAAATGCACACAAACTTCATACCCTATGAATGTACAGTATGTTCAAATAATTTTCACACTGCATTTGCACTTAAAGCACACATGATAACGCATGAGACGCAAAGGAAGTACGAATGTAACGATTGTGGTAAGCAGTTATTTCGCAAAGATAGCATGATACTACATACAAGGAGACATATGAACTACAAGCTGTTTAAGTGTCCGATGTGTGAGCGCGCATTCCCCACATACGACTGTCTATACAACCACACAGAGGCTGTTCATGTGAAGATCAGGAGATACAAATGTGAACCATGTAAGATGTCCTTTATTCTTAAAAGTAGCCTTCGCAACCATTGGCGGTCAAGGAACCATCGAAATAATGCTTACGCTGACCATTCAATAAATGATGAAAAAAAGACCTGGAATAGCACACAGGCTAAAAATATATGGTACCCGTCGGATACATTTGATTTGAAAAATTATATATATATAATTAAGAATACCTACAAACGTATGTCGTTTGTTTTGGCCATGCAACCTAACCTAACCTCTGGATTCCACAGACGTATAAACTTGTCGCAAACATAA
Protein Sequence
MQEKAEDLSSPAIKSYYNTLKELKIVLNRKDCLIKSDVIGLNKYKVRKNVNNPKNIQGIDDKKKKLRTWTKVSYKDKNTFQDEDNSYDSSTNSEASAVKVSQQLYTNNKTDTAYCCEVCMDTFQTMKALNLHSRFHIKFNGGKFTCALCRDTFKTNNELINHKLVHDSEDHCFMCKKCKLAFTSHHDYLQHNARHVKTPLYKCIECSYTFHLRKSYKNHISIHYLKQLKCNLCQETFTKRNELMRHKRCYHLPGIDCVECGKNFSTRRDHEEHMVSHTGVKVFQCLYCGMGFSRHGGKSIHTRKMHTKFIPHECTVCSGRYHSTAALKVHMITHEREKKYECNDCGQQFFHRNSMIQHVRRHMNYMLYKCPMCECSYTTYQNLCEHTEVAHVKIRRYKCELCNASFILKRFLRKHLRSRNHQNKFYAGIDRKKYISSSPLTLSSSHSHPMVMVHHTGVKVVQCLYCGEGFSKHMGRRVHTRKMHTKFFPHECTVCSERFQTSAQLKSHMITHDTEKKYECNDCGQQFFHRNSMIQHVRRHMNYMLYKCPMCERSYTTYQNLCEHTEVAHVKIRRYKCELCNISFVLKKSLHEHFNTTSHRNKAYAAHLRSMNDENWNYLLSFKNSTFCYRLSEMDSKTSEDNDNNKTDSVTSHQFTNNNEDTAYICEMCKDTFQSIRALSLHSRYHLKSNGLKFTCALCGVTFETNRELVNHKLVHDSEDRCFMCNKCKLAYTSHHDYLRHNTRHMKTPLYKCIECSYTFHLLGSYKNHISMHYLKQLKCNSCQEIFTHKYDLARHKLRYHMPGTDCVECGKNCPTRRDYVKHMINHTGVKVFQCLYCGEGFSGQSARSVHTRKMHTNFIPYECTVCSNNFHTAFALKAHMITHETQRKYECNDCGKQLFRKDSMILHTRRHMNYKLFKCPMCERAFPTYDCLYNHTEAVHVKIRRYKCEPCKMSFILKSSLRNHWRSRNHRNNAYADHSINDEKKTWNSTQAKNIWYPSDTFDLKNYIYIIKNTYKRMSFVLAMQPNLTSGFHRRINLSQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-