Pgla001911.1
Basic Information
- Insect
- Papilio glaucus
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:5903-19678[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 2 1.2e+02 3.3 0.2 3 23 223 244 221 244 0.92 2 26 0.12 7.4 7.1 0.0 2 20 314 332 313 333 0.94 3 26 2e-05 0.0013 18.9 0.7 2 23 358 379 357 379 0.96 4 26 1.9e-06 0.00012 22.2 1.1 1 23 387 409 387 409 0.98 5 26 0.0036 0.22 11.9 1.6 1 23 415 437 415 437 0.95 6 26 0.00012 0.0071 16.6 0.2 1 23 443 465 443 465 0.97 7 26 0.0015 0.094 13.0 1.7 1 23 471 493 471 493 0.97 8 26 8e-07 4.9e-05 23.4 1.3 1 23 499 522 499 522 0.97 9 26 0.00071 0.043 14.1 0.6 2 23 831 853 830 853 0.96 10 26 2.6 1.6e+02 2.9 1.6 3 23 889 910 888 910 0.93 11 26 0.011 0.69 10.3 0.1 1 22 916 937 916 937 0.95 12 26 0.0025 0.15 12.4 1.8 3 23 953 978 951 978 0.86 13 26 0.0029 0.18 12.2 8.9 1 23 985 1007 985 1007 0.98 14 26 0.0021 0.13 12.6 2.4 2 20 1014 1032 1013 1035 0.92 15 26 0.00058 0.036 14.3 1.5 1 23 1041 1063 1041 1063 0.95 16 26 4.5e-05 0.0027 17.9 2.6 1 23 1069 1091 1069 1091 0.98 17 26 1.6e-05 0.00098 19.3 0.8 1 23 1097 1120 1097 1120 0.98 18 26 0.0095 0.58 10.5 0.2 2 23 1274 1296 1273 1296 0.92 19 26 0.029 1.8 9.0 0.8 3 23 1332 1353 1331 1353 0.98 20 26 0.0043 0.26 11.6 0.4 1 22 1359 1380 1359 1380 0.95 21 26 0.00019 0.012 15.9 0.4 3 23 1401 1421 1399 1421 0.92 22 26 0.00045 0.028 14.7 5.6 1 23 1428 1450 1428 1450 0.96 23 26 0.00017 0.01 16.0 4.8 1 23 1456 1478 1456 1478 0.97 24 26 0.00053 0.032 14.5 4.1 1 23 1484 1506 1484 1506 0.97 25 26 0.00034 0.021 15.1 1.7 3 23 1514 1534 1512 1534 0.97 26 26 1.6e-05 0.00097 19.3 1.0 1 23 1540 1563 1540 1563 0.98
Sequence Information
- Coding Sequence
- ATGGCGAATATTGAACAACCTTATTGCAGATTCTGTGCCGAAACAAAAACATCCAATAAACTGATAAATCTTGTTAAAGATAATGAAAAATACGAAGAAATATTGTGCAAATTGACTGCCTTGAATGCAGTTTATGTTGATTTATCTAATAACAATAACAACATATTACCCAAAACCATTTGCTTTGTGTGTTACGAATCTTTAAATAAAGCTATTGATTTTCTGGACAAGGTTAAACGATCGCAGGAAGTTTTGGTTAATTTATTCGTAACCAATGACGGCACAAAGACAGATCAATCTGACGATGATAGAATGGGTTTCGACGACTACGGGTTACCAGATTCACTAGCAGAATCTTCACCATTGATTAAAGAAGAGGCAAGTTATCCAGAAAATGAAAAAGTAGTTATAAATTTGGACAATATTTGTTATAGTGTATTGGAAGTGAAAGAAGAGTTGAAAGTTGAAGAATCAGAAAAAGTTCCTGAAAATATCGAAGGAGAAAGTCCATCAAACGAAGAATTCAACAACACTCTTAATGTCCACGATATACTCGGGGCAACTATATGCAATGCACCGTATGAATCAGACATCACAATTTATGCTAAAGAGGTAACCAATACAAGGAAAAGGATTGTACCACTTTGGAAAGATTACCCATGGATATGTGCACACTGTAACATGGAGTTCCTTGATTTACCCACATTACGATCTCATTCCAAAATAGCTCATGGCAAATGTAATGCCTTTGTTTGTTTTGACTGTAAAAGCTATGTGAAAAGTGATTTTGAATCATTTATAAAGCATGTGCGCAGACACAGGAGAAGATTAAGAACAAATTGTTTTTATTTCAGAAAAAGATGCCACTACTGTGATGCCTACATTTCTGAAGATTTATTAAGCACACACGTAGCGCAACATCTTGTTAAACTACAAGTCCCTTGTGGCCTCTGTGGAGAAATACTAAAGAATGAAGAAGCCTTACAGAAGCATTTAGGTGATTACAATTCTATGAAAACAAAACGTAAACCTCGGAGAAAACGTGGAACACCAATCACAGAGGCTGATCTTACTTGCGAGTTGTGTAAAAAAGTTTATAAGAATCCTAACAGCCTAAGAGACCATATGAAACTCCATACAAATAACCGTACAAGAAACTACACCTGTGATCGATGTGGAAAAATGTTTTATAACAAAGGCACCCTGACATCCCACATTATGTCACATGATCAGATTAGGCCGCACATCTGTAAAATCTGTAATAAGTCATTTTTATTTCCAAATATGCTTCGACGACACGTAGATATGCATTCTGGGATCAAACCATTTTCGTGCGAGGAGTGTGGTCGTGGCTTTCGGCTTCTGTATCAACTCAATGCTCATAAAATAATTCACACGGATGCAATGCCTTATGTTTGTGAATATTGTAATAAGGCTTTTCGTTTTAGACAGATCCTTAAAAACCATGAGCGCCAACATACCGGAGCTAAGCCGTACGCCTGTCAAAATTGTGGCATGGAGTTTACAAATTGGTCAAATTACAACAAACATATGAAAAGACGGCATGGCACAGACACATCCAAAAAGAAAATAACTCCTGAGGGTGTATTCCCTATTAACCCTCAGACTGGACAGATTGTACAGTTCACCGATGCTGGAACAGAAGATTGTACAATGGAAAAGAAGACGGTAACCTACTATTACTGTCTTTTATGCGCCCAGCTAAAATGTATCAGCAAAATAATTCAATTGCAGGTCGACGAAGAGGTGTTTCGCAAAACAGTCGAGAAATTATCACGTTTAAATATTCTGTTCGATTTTTACGAAAAATTTCCAAAAACTGTTTGCGAATCGTGTAACGATAATCTTGATAGATCCTTCGAATTTGTCGCAGGAGTTGAAAAGGCCCAGCATATCTTAAATTATTTATATAAAAACCAAATAAACACGGAAAAAAAATCGAAAGAGCAAAACCAAATAAACACGGAAAAAAAATCGGAAGATAAAAACCAAATAAACACTGGAAAAAAAACAGAAAAGCAAAACCATATAAACACTGGAAAAAAATCGGAAGAGCAAACCCAAATAAACACGGAAAAAAAATCAGAAGAGAAAAACCAAATAAACACTGGAAAAAAAACAGAAAAGCAAAACGAAATAAACACTGGAAAAAAATCAGAAAAGCAAAACCAAATAAACACTGGAAAAAAATCAGAAAAGCAAAACCAAATAAACACTGGAAAAAATTTGGAAAAGCAAAACCAAATAAACACGGAAAAAAAATCGGATGAGCAAAACAACATAAACACAGAAAAAAATTCAGAAGAGCAAAAGTGTGATAATTTGACAGACACTGACACAGAGAGCTCTGATATCTCAGAAGGGAATTCTAACGTAAGTTGTGAAAGCCCTCGCAACAATAAAGTGAAGAAAAGTAATTCAGATATTACATCTCTAAAGTATCAAAAAACTTGGAATGATTACCCATGGACTTGTTCTATCTGTGAAACACAGTTTACTACCACTGAAGAACTAAAAATACATACAATGAAATACCATCAATGGTGTAATGCTTTGAAATGTAATGATTGTGGCATAAGGAAGTTGCATTTTAAAAGATTAATAATACATATTCAGAGGCATAGGAGACATCTTAAACTTTTATGCTACAAATGTAATAGTAAATTTTTGTCTACCCTAAAACTAAATGCTCACATGAGAAAAGAACATGGGTCTAAAACAAATTATGTATGTCAAGGTTGCAATGCAGATTTTGATAGTTCAGAGGAACTGCATGAGCATACCCAAACATTCTATAAGGGGAAAAAGTGGATACATGTGCCAGTTGAGTTGCAGTGTAACAGCTTGTCCTGCATTATTTGTAAAAAGTCATTCAAATCCAAGAAATTACTCGATAGTCATTTATTGATACATACTGATAGAAAAAAGGAACACACTTGTGAAAAATGTGGCAAATGTTTCTTCTTAAAACGTCAGTTAACAATGCATATGCATATGCATAGTGACATCCGACCACTTCAATGTAAAATATGCAAGTGCACTTTCAAAACATTAAGGCAGCTGAAACTTCACATACCCATCCATGATGGTGAAAAACCTCACATTTGTGATCAGTGCGAAAAAGGATTCCGTCTGAAGAGTCAACTTAACTCACATAAAATCATACACACCAACTCCTTACCATATGAATGTAGTTATTGTGACAAGAAATTTAGGTTCAAAAGTATTCTAAACCAACATATACGGCAGCACACTGGACTCAAACCATATTCTTGTGAAATTTGTGCTAGGGATTTCACAAATTGGCCTAATTACAACAAACACATGAAAAGACGTCATGATATGGATAAATCTAAGAAAAAAAGGACAGCAGAAGGTGTGTATCCAATTAATCCATCTACTGGGAAAATAATAAAGCATCAAGATGCTAATGAAACACTGGAATGGAAGAATCAGATTTTAAAAAGAAGAGTAAAAGGAAGACAAACACCTCTTTATGGACGCTGGGAAAGAAGAAGCAAGATAATGAAAGTATGGAATAGGGGGGGAAAACCTCATATGTGTGTAACAAACAAGTATCAAAAGTTTGATATTTTGGATAATAAATCAGATTGTAGTATAAGCATAAAGGAGGAAAATTGTACACAATCATCAGATGTCAGTTCTGTTATCTCAGAGGGGAACTCTAACATAAATCAAGAATGTACTCTCAATAATAAACTCGGAAAAACTAGCAGGAATTCAGATCTCAGACCATCTTTAAAGTATGTTAAATTAACTTGGAATGATTATGTATGGACCTGTTCTATCTGTGAAACACAGTTTGCTACCACTGAAGAATTAAAAGTACATTCAATGCAATACCACCAATGCTGTAATGCATTTAAATGTAGTGATTGTAGCATACGGAAGTTGCATTTTAAAAGATTCATAGTACATATTCAGAAGCATAGGAGACATCTCAAACTTTTATGCTACAAGTGTAATACAAAATTTTTGTATTCCTATGAACTAAATGATCACATAAAGACCGCACACAGGATAAAAACAAATTATGTATGTCATGGTTGCAATGCAGATTTTGATAGTTCAGAGGAACTGCATGAGCATACACAAACATTCTATAAGGGGAAAAGGTTGATAAATATACCAGTTGAGTTGCAGTCTAGCACCTTGTCATGTATTATTTGTAAAAAGTCATTCAAATCCAAGGTAGCGCTTAAAAACCATATATTGATACATACTGATAGAAAAAGGGAACACATTTGTGAAAAATGTGGCAAATGTTTCTTCAATAAACAACATTTAGCAGGACATATGTTGTTACATAACGACATCCGACCACATCAATGTAAAATATGCAAGTGCACTTTCAAAACATCAAGGCAACTGAAAGCCCATGTAGCCATTCATGATGGTGAGAAACCTCACACATGTGATCAGTGCGGAAAAGGATTCCGTCTCAAGAGACATCTTAACTCACATAAAATCATACACACCAACTCCTTACCATATGGATGTAGTTATTGTGACAAGAAATTTAGGTTCAAAAGTATTCTAAACCAACATATACGGCAGCACACTGGACTCAAACCATATTCTTGTGATATTTGTGTTAGGGATTTTACAAATTGGCCTAATTACAACAAACATATGAAAAGACGTCATGATTTGGATATGGCTAAGAAAAAAAGGACACCAGAAGGCGTGTATCCAATTAATCCATCTACTGGGAAAATAATAAGGCATGAAGATACTAACGAAACACTGGAATGGAAGAATCAGATTTTAAAAAGAAGAACAAAAGGGAGACCATCATCTCACAGAGAATTACAAATTAATTGCAATGCAAAACGTGAAAATAAAAAATAA
- Protein Sequence
- MANIEQPYCRFCAETKTSNKLINLVKDNEKYEEILCKLTALNAVYVDLSNNNNNILPKTICFVCYESLNKAIDFLDKVKRSQEVLVNLFVTNDGTKTDQSDDDRMGFDDYGLPDSLAESSPLIKEEASYPENEKVVINLDNICYSVLEVKEELKVEESEKVPENIEGESPSNEEFNNTLNVHDILGATICNAPYESDITIYAKEVTNTRKRIVPLWKDYPWICAHCNMEFLDLPTLRSHSKIAHGKCNAFVCFDCKSYVKSDFESFIKHVRRHRRRLRTNCFYFRKRCHYCDAYISEDLLSTHVAQHLVKLQVPCGLCGEILKNEEALQKHLGDYNSMKTKRKPRRKRGTPITEADLTCELCKKVYKNPNSLRDHMKLHTNNRTRNYTCDRCGKMFYNKGTLTSHIMSHDQIRPHICKICNKSFLFPNMLRRHVDMHSGIKPFSCEECGRGFRLLYQLNAHKIIHTDAMPYVCEYCNKAFRFRQILKNHERQHTGAKPYACQNCGMEFTNWSNYNKHMKRRHGTDTSKKKITPEGVFPINPQTGQIVQFTDAGTEDCTMEKKTVTYYYCLLCAQLKCISKIIQLQVDEEVFRKTVEKLSRLNILFDFYEKFPKTVCESCNDNLDRSFEFVAGVEKAQHILNYLYKNQINTEKKSKEQNQINTEKKSEDKNQINTGKKTEKQNHINTGKKSEEQTQINTEKKSEEKNQINTGKKTEKQNEINTGKKSEKQNQINTGKKSEKQNQINTGKNLEKQNQINTEKKSDEQNNINTEKNSEEQKCDNLTDTDTESSDISEGNSNVSCESPRNNKVKKSNSDITSLKYQKTWNDYPWTCSICETQFTTTEELKIHTMKYHQWCNALKCNDCGIRKLHFKRLIIHIQRHRRHLKLLCYKCNSKFLSTLKLNAHMRKEHGSKTNYVCQGCNADFDSSEELHEHTQTFYKGKKWIHVPVELQCNSLSCIICKKSFKSKKLLDSHLLIHTDRKKEHTCEKCGKCFFLKRQLTMHMHMHSDIRPLQCKICKCTFKTLRQLKLHIPIHDGEKPHICDQCEKGFRLKSQLNSHKIIHTNSLPYECSYCDKKFRFKSILNQHIRQHTGLKPYSCEICARDFTNWPNYNKHMKRRHDMDKSKKKRTAEGVYPINPSTGKIIKHQDANETLEWKNQILKRRVKGRQTPLYGRWERRSKIMKVWNRGGKPHMCVTNKYQKFDILDNKSDCSISIKEENCTQSSDVSSVISEGNSNINQECTLNNKLGKTSRNSDLRPSLKYVKLTWNDYVWTCSICETQFATTEELKVHSMQYHQCCNAFKCSDCSIRKLHFKRFIVHIQKHRRHLKLLCYKCNTKFLYSYELNDHIKTAHRIKTNYVCHGCNADFDSSEELHEHTQTFYKGKRLINIPVELQSSTLSCIICKKSFKSKVALKNHILIHTDRKREHICEKCGKCFFNKQHLAGHMLLHNDIRPHQCKICKCTFKTSRQLKAHVAIHDGEKPHTCDQCGKGFRLKRHLNSHKIIHTNSLPYGCSYCDKKFRFKSILNQHIRQHTGLKPYSCDICVRDFTNWPNYNKHMKRRHDLDMAKKKRTPEGVYPINPSTGKIIRHEDTNETLEWKNQILKRRTKGRPSSHRELQINCNAKRENKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -