Pgla006154.1
Basic Information
- Insect
- Papilio glaucus
- Gene Symbol
- SCRT1
- Assembly
- None
- Location
- scaffold:94092-148199[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00049 0.69 9.8 0.2 11 38 85 109 81 114 0.87 2 10 0.14 2e+02 1.9 1.4 16 41 121 148 112 151 0.71 3 10 0.29 4.1e+02 0.9 0.3 19 28 150 159 148 171 0.78 4 10 0.00013 0.18 11.6 0.5 15 41 174 197 163 200 0.86 5 10 0.0089 13 5.8 1.9 11 29 200 216 196 228 0.77 6 10 0.0022 3.1 7.7 0.2 11 31 377 397 373 400 0.81 7 10 0.47 6.6e+02 0.2 0.2 18 28 407 417 404 432 0.80 8 10 0.067 95 2.9 0.2 16 28 431 443 423 455 0.80 9 10 0.0002 0.28 11.0 0.3 19 41 462 481 449 484 0.88 10 10 0.15 2e+02 1.9 1.6 14 29 485 500 481 512 0.78
Sequence Information
- Coding Sequence
- ATGGTGATAGAGACAAACAAGCTGTCAAAAAGAAAACAAACATCGGGGGGATTGCTCGCCGGGGATGACTACATCGCTGAATACAGGCTACTGTTTACGCCGGAGGATAGAGAGGCAGTGCGGGAGTCACTCGATGCTCTTCAGGCGGCTGAAAATTATTCTCTCGAAGCTCCACCTCAACAAGAGGTTCCAACATCAAGTTCAACGAGTCAGAATGACACTGATGCCGCTACTACAGCTGAAGCCATATCAAGTGAGAAGCCGACTAAATTCGACTGTGGTCAATGTGGTAAATATTATGCGACCTCTTCTAATTTGTCGCGTCATAAGCAGACGCACCGTAGCTTGAATTCGGAGTTGGCTCAGCGTTGTACCGATTGTAACAAGGTGTACGTGTCAATGTCGGCGCTGGCCATGCACACGCTGACGCACCGTATGAGGCACGCGTGCGGCGTGTGCGGCAAGCTGTTCTCGCGGCCGTGGCTGCTGCGCGGTCACCTGCGGTCCCACACTGGCGAAAAGCCATATCAGTGTATCGTTTGCGGGAAATCCTTCGCGGACCACTCTAATCTTCGCGCCCATTTACAAACACACTCCCCCGATAAGAAATTCGAGTGCATGCGCTGCCACAAAACTTTTACCCTCAAAACCTACCTGAACAAACACCAGGAGTCGGCGTGCTTGGATGTTGGATTTTTAATAATGTTAGTTTATACATTTTTATATATTATACACACAACCATAGATACGGGACACCCTCCTTTCAGATGGACCAATGACCTCGTGAGGATAGTAAGAAGTCGTCGGATGCAGATAGTAGAAGACCATATTTATCGCCCATATTGTCTCGGGGATCATGCGTTTCTACACCGTGCGGAGGAGGACCTTAACGCGGCTCATGCGATACTGGATTTGAGTGCGCATGCTGTGTTTCTATCGACGCAGCCTCGTCCCGAGCCGACACCTCCTGAGCCGCCGCCTGCGCTGCCGGACCCTCCGATTCCGGAACCACCGCCTGTCGAGCGGCCGCGAAAGACCATCGCTTACACGTATGACGCTTTCTTCGTAAGCGACGGTCGCTCCAAGCGGCGGAACTTCGTCAATGCCCCGGAGGAGTGCCCACCAGTACCCGACCAGAAGTCTAAGTACACGTGCAACGAATGCGGCAAGCGGTACGCGACCTCGTCAAACCTCTCCCTAGACTCGGTGGCGGCCAAGCGATGCGGCGAGTGCGGCAAGGCGTACGTGTCGATGCCCGCACTCGCTATGCACGTGCTCACGCACCAACTGTCGCACGTATGCGGCGTGTGCGGCAAGCTGTTCTCGCGGCCCTGGCTGCTGCAGGGCCACCTGCGCTCGCACACCGGCGAGAAGCCCTACGGCTGCGCTCATTGCGGCAAAGCGTTTGCCGATCGCTCCAACCTACGCGCGCACATGCAGACGCATTCGTCGGATAAAAACTTCGAATGCTCACGCTGTCACAAGACATTCGCACTCAAGAGCTACCTCAATAAACACCAGGAGTCGGCGTGCGTGCGTGACGACGAGTCGGCGCCGCCCGAGTCGTTGCCCGACCTGTCCGACGCCACGCATCTTGGGACCGTAATCTCTGCCGTATGTTTTACATATAAACGTAAAGTATTATAA
- Protein Sequence
- MVIETNKLSKRKQTSGGLLAGDDYIAEYRLLFTPEDREAVRESLDALQAAENYSLEAPPQQEVPTSSSTSQNDTDAATTAEAISSEKPTKFDCGQCGKYYATSSNLSRHKQTHRSLNSELAQRCTDCNKVYVSMSALAMHTLTHRMRHACGVCGKLFSRPWLLRGHLRSHTGEKPYQCIVCGKSFADHSNLRAHLQTHSPDKKFECMRCHKTFTLKTYLNKHQESACLDVGFLIMLVYTFLYIIHTTIDTGHPPFRWTNDLVRIVRSRRMQIVEDHIYRPYCLGDHAFLHRAEEDLNAAHAILDLSAHAVFLSTQPRPEPTPPEPPPALPDPPIPEPPPVERPRKTIAYTYDAFFVSDGRSKRRNFVNAPEECPPVPDQKSKYTCNECGKRYATSSNLSLDSVAAKRCGECGKAYVSMPALAMHVLTHQLSHVCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSSDKNFECSRCHKTFALKSYLNKHQESACVRDDESAPPESLPDLSDATHLGTVISAVCFTYKRKVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01143278;
- 90% Identity
- iTF_01143278;
- 80% Identity
- iTF_01143278;