Basic Information

Insect: Papilio gigon
Gene Symbol: ush
Assembly: GCA_027563995.1
Location: JAODUI010000001.1:841768-847543[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0051 0.37 11.5 0.2 1 20 139 158 139 160 0.94

2 9 7.6e-05 0.0055 17.2 0.9 1 23 198 220 198 220 0.98

3 9 0.05 3.6 8.4 0.1 3 20 251 268 250 270 0.92

4 9 0.0086 0.62 10.8 2.2 2 21 510 529 509 530 0.95

5 9 0.0059 0.43 11.3 0.2 3 20 559 576 557 578 0.91

6 9 5.8 4.2e+02 1.9 0.0 2 23 606 627 605 627 0.92

7 9 0.0075 0.54 11.0 1.3 1 23 633 655 633 655 0.99

8 9 0.39 28 5.6 0.7 1 23 706 729 706 729 0.95

9 9 0.35 25 5.7 1.7 3 20 763 780 762 782 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0051	0.37	11.5	0.2	1	20	139	158	139	160	0.94
2	9	7.6e-05	0.0055	17.2	0.9	1	23	198	220	198	220	0.98
3	9	0.05	3.6	8.4	0.1	3	20	251	268	250	270	0.92
4	9	0.0086	0.62	10.8	2.2	2	21	510	529	509	530	0.95
5	9	0.0059	0.43	11.3	0.2	3	20	559	576	557	578	0.91
6	9	5.8	4.2e+02	1.9	0.0	2	23	606	627	605	627	0.92
7	9	0.0075	0.54	11.0	1.3	1	23	633	655	633	655	0.99
8	9	0.39	28	5.6	0.7	1	23	706	729	706	729	0.95
9	9	0.35	25	5.7	1.7	3	20	763	780	762	782	0.92

Sequence Information

Coding Sequence: ATGGCGGATAAGGCAGCTGCCTGTGTTGCCAGCTTCGCCGTTATCGCCGTTGCAGACATCAAGATTTATTCCTTAGGACAGGACGCGGCCGGTGAAGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCTGGGGAACCTCGTACGCCGAGTTCGGGAGAGGAAAAGGCGGCCTCCAGCGGAGGCGCATCGCCCGCTTCCGGGAGCTCACCCGCCGCCTCCCCGCCGCGCCTCCGACTCAACGCCAGCCTCGCCACGGATCCCGCGCTGGCGCCGCAAGCCACGCCGCTGAAGCGGGAGCCGCCCTCCCCGTCGCCTCCGCCTCCGCCGGCGCCAAACTTACAAGCAAGAGACTACCTTGCATTAACAGCGGCCGCTTTTCCCGCAATTATGCCTGCAACGACTCCCCCTGTCTACATGTGCAAGCCTTGCGGTATTCGCTATTCTTCGCTAAGTACTCTCCAAGCGCATCAAGAGCATTATTGTTCGAATAGACGCGGCAAACCGGGTGACGGATTGGAGACTCCAGCCGACGCTGCGGCAGATGAATCTAGTAGCGAAGCCAAAACTCCGCGGCCACCTGGAAAACAATACGCATGTACCTATTGCTCATACAGCGCTGATAAAAAAGTAAGCTTAAATCGACATATGCGAATGCATTCATCTTCACCTATAAGTAGTGGCACCCCAGGACCCCCACCGGCAGCCAACGGGGAAACCACTGAAGGTCCTCCTGCACTAGACCGCTACTGCGCCGACTGTGATATTCGTTTCACTTCTATCAAAACTTATCGGGCGCACAAAGCCAACTACTGCAGCACAAGGCAAGTAGTCAAACAAGTTTTAGCTGCAGCGCGGGGAGGCTCAGCCACGTCGGGATCGGCGCCTCCATCTCCGGGGGCCACGCCGCCCGCTCAAAACCAATATGCACTCGCGCTACCTACAAATCCAATTCTCATTGTACCGTACTCTCTTCTAAGAAGTGCGAGTACGCTACCGGGTGCGACTTTACCAGATCCAGACACACCATGCTTCCTGTTACCAAACGGAACTTTTCAACCGCTAAGTCGTGCTTTACCAAATATGAACGCCGATGGAAAGGACTCAGAGGTATTGAAATCCGCTAATCGGCCGCGTGAACCTCCTCGCGATGGTGCCACACCACTAGATCTCAGCATAAGACGTTCCCCAGAATCTGTCGCTACGGATGACCAGGAGAAAGAAAACAGAATACGGTCTACTACTCCGGAACAAATCGTGTGCGCTCCATCTTTGCCAGGATCTCCGGGAACACCGTCTCCATCGAGGCGATCTTCCTCGCCCGGTGGGGAAATCTCCCCAAAAAGACGACGTCGCAATTCTAGGGGCCCGACTCCAAAACCACCGAGCGTAGCATCTCCACCCGAAGATAAATTTAATCCGATAGGTCCACCGGCAATTCTCCCGCCATCTTTAGCTCTGCGCCTCGCTTCCGAGCTTCCTGCAGCGCCCACGTCTCCTCAAGTTTTGATCAAGCAGGGCGTTTCCAAATGCCAGGAGTGCAACATAGTCTTTTGCAAATATGAAAACTATCGGATCCACAAACGGTACTATTGCTCCGCGGGCGGCGGCGAGGAGCGCGCGAGTCCGGCGCCGCCGGAGCCCGGCCCTCCCCCGCAGTATCGGCAGCTGATTTGCCTGGCTTGCGGGATCCACTTCAGTTCTTTGGATAACTTGACTACGCATCAATCTTTCTATTGCACAAAAAGTGAGACCCGTTCGCCGAGGAGCGCGCCCGAAGTGACTCGGCCCAGTTCGGGCCCCGAAGGCGGGTGGAAGTGCCCCTGCTGCGAAGTAGTGTCGCCCACGGCGGTGGCGGCGCAACGGCACATGGAGGCGCATGCCGGGGTCAAGGCGTTCCGCTGCACCATCTGCCGGTACCGCGGCAATACGCTGCGCGGAATGCGCACACACATACGAATGCATTTCCGTGAGAAGCCCTCTGATCTTCAGGAGGAAAGCTTCATATCTTGCGTACTAGAAGAAGAGAGCCGCGAGACGACGTCACCGAGCGGGGCAGCGGCGGGCGGTGCGGCGGGCGGTGCGGCGGGCGCGCCAGCAGCCGGGGAGCGCGTTCACCGCTGCGGCAGCTGCGCCTACACGTCCACGTACCGCGGCAACGTGGTGCGGCACGCGCGTCTCGTGCACTCTACGGAGGAGCCCGAGCCCGAGGAGCAAGCCGCCCCGCTCCCTGCACTCGATATTAAGAAAGAACCCGAAACTGAACTAGAAGAAACGCCCAACCACTGCAAATCGTGCGATATATCATTTAAATATGTGAACACGTTTAATGCTCACAAGCAGTTCTACTGCCCCGCCGCGCAGCGTGCCGCCAAGGCGCGCAGCCAGGACTCCCCCGCCAACAACAACTTGCCCGCCCCTGCACCCGTGCTATAG
Protein Sequence: MADKAAACVASFAVIAVADIKIYSLGQDAAGEDEEWGNESEAMPGEPRTPSSGEEKAASSGGASPASGSSPAASPPRLRLNASLATDPALAPQATPLKREPPSPSPPPPPAPNLQARDYLALTAAAFPAIMPATTPPVYMCKPCGIRYSSLSTLQAHQEHYCSNRRGKPGDGLETPADAAADESSSEAKTPRPPGKQYACTYCSYSADKKVSLNRHMRMHSSSPISSGTPGPPPAANGETTEGPPALDRYCADCDIRFTSIKTYRAHKANYCSTRQVVKQVLAAARGGSATSGSAPPSPGATPPAQNQYALALPTNPILIVPYSLLRSASTLPGATLPDPDTPCFLLPNGTFQPLSRALPNMNADGKDSEVLKSANRPREPPRDGATPLDLSIRRSPESVATDDQEKENRIRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPGGEISPKRRRRNSRGPTPKPPSVASPPEDKFNPIGPPAILPPSLALRLASELPAAPTSPQVLIKQGVSKCQECNIVFCKYENYRIHKRYYCSAGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSFYCTKSETRSPRSAPEVTRPSSGPEGGWKCPCCEVVSPTAVAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFREKPSDLQEESFISCVLEEESRETTSPSGAAAGGAAGGAAGAPAAGERVHRCGSCAYTSTYRGNVVRHARLVHSTEEPEPEEQAAPLPALDIKKEPETELEETPNHCKSCDISFKYVNTFNAHKQFYCPAAQRAAKARSQDSPANNNLPAPAPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01148406;
90% Identity: iTF_01143441;
80% Identity: -