Pgig020020.1
Basic Information
- Insect
- Papilio gigon
- Gene Symbol
- -
- Assembly
- GCA_027563995.1
- Location
- JAODUI010000021.1:933780-941696[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.7 1.3e+02 3.5 1.2 1 23 233 255 233 255 0.94 2 16 0.082 5.9 7.7 0.3 2 23 284 306 283 306 0.95 3 16 0.091 6.5 7.6 0.3 2 23 327 349 326 349 0.90 4 16 0.00046 0.033 14.8 3.6 2 23 355 377 354 377 0.95 5 16 0.025 1.8 9.3 4.7 1 23 382 405 382 405 0.93 6 16 0.5 36 5.2 0.1 3 23 409 430 407 430 0.94 7 16 0.0023 0.17 12.6 3.0 2 22 437 457 436 457 0.94 8 16 0.0035 0.25 12.0 0.6 1 23 516 539 516 539 0.93 9 16 0.76 55 4.7 0.1 2 23 567 589 566 589 0.94 10 16 0.044 3.2 8.5 0.2 3 23 613 635 611 635 0.95 11 16 0.00039 0.028 15.0 0.4 3 20 642 659 640 663 0.90 12 16 0.0077 0.56 10.9 0.9 1 23 668 691 668 691 0.97 13 16 0.0034 0.24 12.1 1.9 2 23 697 719 697 719 0.92 14 16 0.00037 0.027 15.1 6.0 1 23 723 746 723 746 0.97 15 16 0.0083 0.6 10.8 0.6 2 23 753 774 752 774 0.96 16 16 0.00074 0.053 14.1 0.7 1 23 780 802 780 802 0.97
Sequence Information
- Coding Sequence
- ATGGATTTTGATGATATTGTCGTAAAAGAAAGCCCGGGGCTTTGCCGGTGCTGTCTTTCCGAAGGATGCTACAAAGACCTCAGTACCGAGTATGCATGGATGGACGACGCAGAAATTTATGCCGAAATGTTACTAGAATGCTTCGATATTAGTATATCTCAACACAATGAAGGGCCGAATGGTGCCAGCCGTCTAATTTGTGAAGTATGCGTAACAAGACTGCGAGATGCTTGCAATTTCAAGAAGCAGGTACTGGCCTCGGAAAAGAAATTTATTGACATGATTGGCCGAGGAGCATTTAAACCTAAAGTGGTTACATACTCTGTTCCGATAAAATCTGAGGCGATTCTGGATGTGCCTCAGGACACGGAGGTGGAGTATCTCGAGGAGGGGATGGAGTTTGGTGATGATGATGTACTAAAAGATAGCGGTCAATCGAGTAGAGATAATGTAACAGTATCTATATTACCCGTCAAAGCAAAAAAAGGGAAACCCAAAAAGTCTGTCAGTAAGACCGAGAAGAAATCATGTTCAAAGATAATACTTGTGGAAAAGCCGAAGATATCTAAGCCTGTTACTAAAGATAAGAAAACGAGGAAATGTAAAGGAATTGAGTCGTCATCTTTACGTAGACGAAAGAATCTTCAAACGCTTTTCAACAATACAACAATTATACCTTTTAAATGGCGCGGGAAATATCTTTGTTTTTATTGTAGTGAAAATATGACGGAATATAAAGACCTTAGAAGTCATACGAAGGCTCACGGCGACTGTTCCATTGTCGACCATAGTTTAAAGGTGCTGAAAGGCGGTCAGAATATGGAAATCAAGATTGACGTCTCAGATATAACCTGCCTAATTTGCAATGAACATTATCCAACAGTCACTGATGTAATAAATCATTTAAATTCAACACACAAACTCAATTACGATACTGAAGTGCAAATGGCAATAGAAGAATATAACCTTGTTAATTTACAATGTATAGTGTGTGATGAAAGATTTACGTACTTTGGTTATTTAGTGTCTCACGTTAATAACAAACATCCTAAAAATTGTCTAGTATGCGATCATTGCGAACAGAAATTTAATAAGAAAAGAGATTTGTTTTCACATATGAAAAATTATCATAAAGACGGCGGCTACGAATGTGAATATTGTTCGAGATGTTTTAAATCCTTAAATATATTAAGAAAACACAAAAGTAACAGACATTTGACAAATTGTGATGTATGTCAGTTGAAACTACCGACCGCGGCACTGAAACAGAAACACATGGATATAGAACATCCTGAAAATGGATCTTTGACTTGTGATCATTGTTCCAAAGTATTCCATACGAGACAAGGTTTAAAAATGCACACGAGAAAATGTAAGGTAGTCGAAGATTTATTCAACATTGCCGTGAAGAAGGAAATCGATTTTATTGATTCGGATGAATGTTGCGAAGATTCGAGACGACCGAGCGTCAAACAGATCAGGGAAAATATAGTGACAGTTGTTAATATGACAACCGCCGTACCTTTTAACTTCTTTAAAAATAAATTCAACTGTTTCTATTGTTCCAAAGATTTCCCCGATTCAGACACAATGAGAGAACATACTATTTTAGAACATCCTGTATGCGATATCAAACAGAAATGTATAAAGAAATGTAGGGAATCGGTTGCTTGTGTTAAAATTGATATATCAACGCTATCGTGTAAACTTTGCTTCACACCTATTAATGGGTTTGACAATCTTATTGAACATTTAATAACTACCCACAATGCGAATTATGATAATACAATAACTACATGTTTACAACCTTACAAGTTAATTAAAGATAATATGGCGTGTCCGATTTGTCCAAACGAAATATTTAGATTCTTCGGTACTCTGTTGAAACATATGAATAAAAAACATACTAATAATAACATAATTTGCGTATACTGCGGTGAAACGTTTAGACGCGATCAGAATTTGAGGGTACATATATGGCGTCATCATAGAGACGGTAGATTTAAATGTAGCATTTGCGGTACAGATTGCAATATACCCTCACGCCTGTATATGCATATGGCGAAAGATCACGGTGTCAAAGCGGCCAAGTGCCCTAAGTGTAGTGAATGTTTCGAGACACAGTATTTAAGGCAGAAGCATCTAATTGATGCACATGATTCCGGACACAAATGTAATTATTGTAGTAAAATGTTCACTAGGTATTCATTTATGAGAGATcacgtgagacggacgcatttgaaggagaaaaatgtagaatgcaccatctgtatgatgaagttttttaataatatattattgagacgtcatatggtcaagcatagtggtgagaagaattacaattgtgatgtatgtggtgaacgattctattggagaaagagtctacgcaatcatatggttagacataataaAAATTCACCCATACAAATGTAA
- Protein Sequence
- MDFDDIVVKESPGLCRCCLSEGCYKDLSTEYAWMDDAEIYAEMLLECFDISISQHNEGPNGASRLICEVCVTRLRDACNFKKQVLASEKKFIDMIGRGAFKPKVVTYSVPIKSEAILDVPQDTEVEYLEEGMEFGDDDVLKDSGQSSRDNVTVSILPVKAKKGKPKKSVSKTEKKSCSKIILVEKPKISKPVTKDKKTRKCKGIESSSLRRRKNLQTLFNNTTIIPFKWRGKYLCFYCSENMTEYKDLRSHTKAHGDCSIVDHSLKVLKGGQNMEIKIDVSDITCLICNEHYPTVTDVINHLNSTHKLNYDTEVQMAIEEYNLVNLQCIVCDERFTYFGYLVSHVNNKHPKNCLVCDHCEQKFNKKRDLFSHMKNYHKDGGYECEYCSRCFKSLNILRKHKSNRHLTNCDVCQLKLPTAALKQKHMDIEHPENGSLTCDHCSKVFHTRQGLKMHTRKCKVVEDLFNIAVKKEIDFIDSDECCEDSRRPSVKQIRENIVTVVNMTTAVPFNFFKNKFNCFYCSKDFPDSDTMREHTILEHPVCDIKQKCIKKCRESVACVKIDISTLSCKLCFTPINGFDNLIEHLITTHNANYDNTITTCLQPYKLIKDNMACPICPNEIFRFFGTLLKHMNKKHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCSICGTDCNIPSRLYMHMAKDHGVKAAKCPKCSECFETQYLRQKHLIDAHDSGHKCNYCSKMFTRYSFMRDHVRRTHLKEKNVECTICMMKFFNNILLRRHMVKHSGEKNYNCDVCGERFYWRKSLRNHMVRHNKNSPIQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01147581;
- 90% Identity
- -
- 80% Identity
- -