Pgig020029.1
Basic Information
- Insect
- Papilio gigon
- Gene Symbol
- -
- Assembly
- GCA_027563995.1
- Location
- JAODUI010000021.1:999479-1002602[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.3 92 4.0 1.0 3 23 52 73 51 73 0.92 2 20 0.2 14 6.5 0.6 2 23 101 123 100 123 0.92 3 20 0.012 0.86 10.3 2.1 2 23 147 168 146 168 0.96 4 20 0.00024 0.017 15.7 0.6 1 23 172 195 172 195 0.98 5 20 0.43 31 5.4 0.3 2 21 200 219 200 220 0.95 6 20 0.023 1.6 9.4 0.4 1 23 227 250 227 250 0.94 7 20 0.015 1 10.1 0.4 1 23 257 280 257 280 0.82 8 20 0.45 32 5.4 3.1 3 23 286 306 285 306 0.93 9 20 0.051 3.7 8.4 0.3 3 23 360 381 358 381 0.95 10 20 4.2 3e+02 2.3 0.3 1 23 404 427 404 427 0.89 11 20 0.00046 0.033 14.8 0.5 2 23 451 472 450 472 0.96 12 20 0.052 3.8 8.3 0.2 2 21 477 496 476 497 0.92 13 20 0.56 40 5.1 0.2 1 23 538 561 538 561 0.94 14 20 0.047 3.4 8.5 0.1 2 23 587 609 586 609 0.95 15 20 0.0026 0.19 12.4 0.8 2 23 633 654 632 654 0.95 16 20 0.00013 0.0092 16.5 0.0 1 23 658 681 658 681 0.97 17 20 0.013 0.95 10.2 0.7 1 23 685 708 685 708 0.98 18 20 6.8 4.9e+02 1.7 0.6 1 23 713 738 713 738 0.87 19 20 0.052 3.8 8.3 5.6 1 22 747 768 747 770 0.88 20 20 0.00032 0.023 15.3 1.1 1 23 780 803 780 803 0.96
Sequence Information
- Coding Sequence
- ATGAGAATGATTTTTTTTTTTTCAAAATTACAGAAGAAGAGTAAATCCGAAACAGTTGCGGAGAGCAACACACAGAAGGCGAAACGGAACGCCGGAGTTGTTTTAGAGTATTCGACGGTATATCCGTTCAGGCTGCACGGGAAGCACTTGCTTTGCGTCTACTGCTGCGAGGAGTACACTGACCCCGCGCTCTATAGACATCACATGGACGAGATGCACCAAACGTTCTCAATATCCGTGGCATTCGCTCACTGCGGCAAGGGCAACTTCAGACATTTAAAAGTCGATTGTACAAATTTAAAATGCAGACTTTGTAATCAACCCTTCGACAAACTAGATGAAGTTGTAACGCACATAGATCTATGCCACCCGACAAGCAAACTTGATAGGAAACACGAAGTCGGCCTGCAACCCTACAAGATAGACAAAGATAGGTGGAACTGTTACTTGTGCAATATGCGATTCCCTTCGTTAATTACGTTATGCCGACACACAAACTCACACTACCAGAAATTTACATGCGAGAACTGCGGCAGGAGTTATCTAACACGGGAGGCGTTGACTTATCATATACGCTCAAGTCACTCGGAGAAACCGCAGTGCAGGAAGTGCTGGCAGGAGTTCCCCACTATGGAAATGAAACGAGAGCACATGAGACTATCGAAAGCATGCTGGAGGTTCGTTTGTACGAGTTGCAGCGAACGTTTCATGTCTTCGGAAGCGAAACAGAAGCACATGACGGCGGCGCATGGCCGGCCCAAGTCGACGTACACGTGTCCAGATTGCGGGGAAGTTTACGATAATAGGAAAATATTCTACAATCATTTCGCAATGAACCACACCAATGCTAATGTGTGTTCGTGCTGCGGAGTGAAGTGTGGATCGAAGCAGCAACTGGAGGATCACAGACGCGTCcatacggGGCCCAGAAAGGAACTCGATGGATTAAAGAAAGAGAATAAACCAAAAAGACTGTTTGAAAGGTCCGTCAACCAGAATCCACAGCGGCAAAACGCTGTGCTGATATTGAAGCATTCCACCGCGTCCCCTTTTAAAACACGTTTTAACAGAATCATTTGTTCCTATTGCCACGAGGAATTTCAAAATATGGCTGTACTCCGCGAACACGTTACTACCGAACATTCGAATGCCGATTTCAATAGTGCGTTCTATAAAATTATAGACGATCTTAAAATAGACATAACCCAATTCAAATGTAAACTATGCTCTAGTGATATGGCCAATGTTGACGCGTTCATGACTCATATATCCAGAGATCACGGTGTATCAGTAAACTTTGCAGTGCCCTTCGGCGTGCTACCTTATAGACAAGGCCCTACCGGTCTCTGGATGTGCTTAGACTGTTACAAAAGTTTCACAGAGTTCTCTCAAATCAACGCCCATCTACGTAGTCACGTTAAAATATTAACTTGCGATAAATGCGGAGCTACCTTCTTGTCCAAACAGGGGTTGCGACAGCACGAAAAGAGCTTCAAATGCAACAAGGCGTCGTACAAGCCACGTTTCGGTAAAGCGCTCAAACATCGCAGCAATACTGAAATAATTCTTCAATGCTCGACAGCTTGCCCCTTTCGGACTTGGGGACATAACTTCAATTGTGTATTCTGCCGGGTACAGTCCAATGACCCAGTTGGACTACGCACTCATATGGCTAATCGTCACGCGAACTTTGATATTCAACTCGTGTTCAGTAGGAAACTCCGTAAAGACTTTCTTAAAGTCGACATCACAGACCTTCAATGTAAACTATGCTTCATGTCCATCGACAGTCTTGACGAGTTGATGGCACATCTGAAGAACGATCACAAGCAGCCGTTGAACTTCGACGTCCAACCTGGCGTGCTACCGTTTAAATTGAACGACGGTTCCAGTTGGCAATGTGCTATTTGCAAAATGCAATTTTCCAACTTTATATCCCTTAAAAAGCACACTTCGGAACATTACCACAACTATGTCTGTGATACATGCGGTGAAGGATTTATAACTGAGAACGCTCTGATTGCGCACACGAAGGTGCCGCATGATAACAAATACAAATGCGGTCGATGTGTAGCTACATTCACAACTCTTGAAGAGAGGAACTCGCACGTCAAAACCCAGCATACGAACTTACCGTACATGTGCGTGTATTGCAAAGACAAGCCCAGGTTCGGTACGTGGGAGTTACGCAAGCGTCATCTCATGGAATTCCATAATTTCAAGCCGCGAACGGAGATGTATGAATGCACGACGTGCCACATGTCGTTCAAGACGAGGTCGCAGAAGTACCACCACAATGTGAAAGCGCATCGGACCAAAATGGAAACTGAGTTTGGGTTCCCGTGCGGCCATTGTTCTAGGGCGTTCGCATCGAAGTTATCTCTAGACAAACATATGGCCAAGAAACATTTTCATAGCTTATAA
- Protein Sequence
- MRMIFFFSKLQKKSKSETVAESNTQKAKRNAGVVLEYSTVYPFRLHGKHLLCVYCCEEYTDPALYRHHMDEMHQTFSISVAFAHCGKGNFRHLKVDCTNLKCRLCNQPFDKLDEVVTHIDLCHPTSKLDRKHEVGLQPYKIDKDRWNCYLCNMRFPSLITLCRHTNSHYQKFTCENCGRSYLTREALTYHIRSSHSEKPQCRKCWQEFPTMEMKREHMRLSKACWRFVCTSCSERFMSSEAKQKHMTAAHGRPKSTYTCPDCGEVYDNRKIFYNHFAMNHTNANVCSCCGVKCGSKQQLEDHRRVHTGPRKELDGLKKENKPKRLFERSVNQNPQRQNAVLILKHSTASPFKTRFNRIICSYCHEEFQNMAVLREHVTTEHSNADFNSAFYKIIDDLKIDITQFKCKLCSSDMANVDAFMTHISRDHGVSVNFAVPFGVLPYRQGPTGLWMCLDCYKSFTEFSQINAHLRSHVKILTCDKCGATFLSKQGLRQHEKSFKCNKASYKPRFGKALKHRSNTEIILQCSTACPFRTWGHNFNCVFCRVQSNDPVGLRTHMANRHANFDIQLVFSRKLRKDFLKVDITDLQCKLCFMSIDSLDELMAHLKNDHKQPLNFDVQPGVLPFKLNDGSSWQCAICKMQFSNFISLKKHTSEHYHNYVCDTCGEGFITENALIAHTKVPHDNKYKCGRCVATFTTLEERNSHVKTQHTNLPYMCVYCKDKPRFGTWELRKRHLMEFHNFKPRTEMYECTTCHMSFKTRSQKYHHNVKAHRTKMETEFGFPCGHCSRAFASKLSLDKHMAKKHFHSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01145501;
- 90% Identity
- -
- 80% Identity
- -