Pgig019920.1
Basic Information
- Insect
- Papilio gigon
- Gene Symbol
- Zfy1
- Assembly
- GCA_027563995.1
- Location
- JAODUI010000021.1:140402-145074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.6e-05 0.0033 17.9 0.6 1 21 165 185 165 186 0.96 2 18 0.44 31 5.4 0.1 1 23 219 242 219 242 0.95 3 18 8.9e-06 0.00064 20.2 2.1 2 23 248 269 247 269 0.95 4 18 0.045 3.3 8.5 1.9 2 21 273 292 272 293 0.92 5 18 0.0028 0.2 12.3 1.0 2 23 332 354 331 354 0.95 6 18 1.9 1.4e+02 3.4 0.3 3 23 362 381 360 381 0.90 7 18 0.00038 0.027 15.0 1.3 1 23 386 408 386 408 0.98 8 18 0.0013 0.097 13.3 1.8 1 23 414 437 414 437 0.98 9 18 6.6e-05 0.0047 17.4 0.3 1 23 446 468 446 468 0.98 10 18 8.1e-05 0.0059 17.2 0.6 2 22 584 604 583 604 0.95 11 18 7.2 5.2e+02 1.6 3.8 3 23 610 630 609 630 0.95 12 18 0.00052 0.037 14.6 4.7 1 23 635 658 635 658 0.97 13 18 0.016 1.1 10.0 0.5 1 23 663 685 663 685 0.93 14 18 0.0018 0.13 12.9 2.5 1 23 721 744 721 744 0.97 15 18 0.19 14 6.6 1.4 1 23 750 772 750 772 0.81 16 18 1.1 77 4.2 2.0 5 23 782 800 779 800 0.95 17 18 0.11 8.2 7.2 1.0 1 23 806 829 806 829 0.86 18 18 6.4e-05 0.0046 17.5 1.4 1 23 837 860 837 860 0.97
Sequence Information
- Coding Sequence
- ATGAGTCGTCAAGTGGACATAAAAGCATTAGTTTCGCACGTAGTGCGAGGAGATGGTATAAATAAATGCAGAATATGTATGGGGGACACAACGGAAGGCCAGGTTTTTCTTGGCGATACAGTATTGATGGACGGAGATCAACCTGTAACATTATCGGAGCTGCTGGAAACTATAACAGGAGTTCAGATGCCGATCAGTGAGGATCTGCCCGTCAACCTGTGCTCAGTATGCTTCACGTCCGCGTTGAGCGCAGTCGACTTCCGCACGGCCTGCCGGCGAGCGGCCCGCCAGTGGCAGACTGTCGTACAACTGATAGCCGACCTGCCACAACATGCGAATGATAAATCACTAATCGCTTTAGTAGAAGAAGACCGGATGGTGCTTGTAACCGACTGCGGTCATATATCGTCAGCTAAAACAGCAGCTCACCAACTAAACAGAAGGATGAGACCAACAGAGGAGATGGTCGGTAAAGAACATCGGAAACATCGTTACCAATGTCCGGACTGTGGCAAACAGTTCGGCTACGTCCACCAGTTGTATCGACATTTGAAAGAATCGACAGATTTCAAACGGGCCTGTTACATTTGTGCCAAGATCATGAGCAGAGAGGACTTGGTGACACATTTAAAGGAAGATCACAATCGGAAGCCCTACGATTGTAAGAAATGTCCGGCTCTGCTGCCGACGTACACTCAGTATGTCCAGCATTTACGCGCGGCGCACTCGCGAGGCTCTTGCACGTGTGGCGACTGCGGACGAAGTTTTAAAAATTCCAATAGTTTCAGAGCTCATCTCTCCGTTCACTCGATAAAGTCCTGCCCTAGTTGTGACCAGGTGTTCCGCAACCAAACGTGCTACTTGTACCATGTTAAAAAGTGCTGCAATCTAGAAGTCGCCAACACACGCAAGGGCATGAAGGTCGAAGTGATGAATAAAAGTGGTGATAAGAAAGTGAAAGTCGGTTTACGTGGCCGGATTGACAAGGAATGCGTTTGTGATTACTGTAACAAGAAGTTTGCGGGCAAGAAGTTTGTATCCGCTCATATACAGATCGTCCACATGAAGAACACGCACAGTCCGTGCGCGTACTGCGGCAAGCTCCTCGCTGCGGCTCACATGACGGAGCATATCAAGAAACACCAAGATATGTCATTCAAATGTAACTACTGCGGCGTTACGTTAAGAACTAAGTTGGGTTACACACAACATTTGCGTTTGCACAGCGGTGAGAGGCCCTACCGCTGTCAGTACTGCAAGGAAACGTTTTCCGGCTCCTCGAGACGCTCGGAGCACATTCGGAAAGTGCATAGGAACTCGGACATCGTATTAAAATATGAATGCGGAGAATGCTCAGCGAAGTTCCGACTACCCTACATGCTGAAGAAGCACATGTCAGTACACAGCGAGAGGCGGTCCTTGTTCGAGTGCTATGTCGAGGAGGCGAAGAGGTTGCCGCGCGGCGTCTGCTCCTCATGCACGCAGATGGCGCTCGCGGCGGCACATTTCCGTGAAGTATGCCACGAGTCCGCCACGCAGTGGACACGGGCCACGTCCATCCTCAGTCTCATATCAGCTCCTCGACCTGAAGAGAAAGCTTTCCTCTTCCTTTATAATAAAGATGTCTTAATCAAAGAAATCAGTAATATATCGTCGACAAAAGCCGCTGTCAGTCGACTGAATGAACACGGAGAGCCTATGCTAAAAGAGGTATCACGACAGAAGTCGTTCTCGAAAGAATCCCCCTGGAAGTGTCAATATTGTGGAAAGAAATTCCGATTGGTGTACTCTCTGAACACACATTTGAGGATGACTGCTAACAGAGCTTGCACACATTGCGGCCTCATCATCAAGAAGAGGAAGTTGCATCAGCATTTAAAGAGAGCTCATGGTATATATCTGTTCCATTGTCAAACATGCCACAAGTTATTTAAAGAGTCATCGCAGTTAGATCGACATATGGAAACGGCACATGGTGTAATGTCACACCGCTGTCCCGCGTGCAAGCAAGGTTTCGTAAGCGAAAGAGCGCTGCGTGCCCACAAATACGCGCACACGTTATTCAACTGTCTTTCATGTAACAGTAGCTTTGAAAGCCTAAGGTGTTATAGATACCACGTCGGCCGCTGCCAGGGGTCGAAGGCACCACCCGATTCGTTATACGAATGCGATTACTGCGCCTGTGGGTACACGAAAAAGGATTCTCTGAGAAGTCACATCCAGAATAAACATTTGAATGTGTTACAATTTGTCTGCCAGAAATGTGGCAAGAGGAGCGCCAGTCTGGCCCATCACAAGGCGCATGAAGTCATCCACGTGGAGGAAAGGGAAGTTTTCAAGTGTCACTGCGGGGCGAGGCTGACCACGCAGCTAGGTTTTAACCTGCACCAAAGAATACATTCTGGCGAAAAACCATACCAGTGTAAGACGTGCGGTGAGAGGTTCCTGTCCGCCTCGAGGCGTTTGGACCACGTGAAGAGGCGGCATATGAATTCGGAAGACATGCCCCACAAATGTAGGGAATGCTCGGCTAACTTCATAAGGCCTTCGTTGCTTAGAAGGCATTATAAGGTCGCCCACGGTGTCTCCAGCTGA
- Protein Sequence
- MSRQVDIKALVSHVVRGDGINKCRICMGDTTEGQVFLGDTVLMDGDQPVTLSELLETITGVQMPISEDLPVNLCSVCFTSALSAVDFRTACRRAARQWQTVVQLIADLPQHANDKSLIALVEEDRMVLVTDCGHISSAKTAAHQLNRRMRPTEEMVGKEHRKHRYQCPDCGKQFGYVHQLYRHLKESTDFKRACYICAKIMSREDLVTHLKEDHNRKPYDCKKCPALLPTYTQYVQHLRAAHSRGSCTCGDCGRSFKNSNSFRAHLSVHSIKSCPSCDQVFRNQTCYLYHVKKCCNLEVANTRKGMKVEVMNKSGDKKVKVGLRGRIDKECVCDYCNKKFAGKKFVSAHIQIVHMKNTHSPCAYCGKLLAAAHMTEHIKKHQDMSFKCNYCGVTLRTKLGYTQHLRLHSGERPYRCQYCKETFSGSSRRSEHIRKVHRNSDIVLKYECGECSAKFRLPYMLKKHMSVHSERRSLFECYVEEAKRLPRGVCSSCTQMALAAAHFREVCHESATQWTRATSILSLISAPRPEEKAFLFLYNKDVLIKEISNISSTKAAVSRLNEHGEPMLKEVSRQKSFSKESPWKCQYCGKKFRLVYSLNTHLRMTANRACTHCGLIIKKRKLHQHLKRAHGIYLFHCQTCHKLFKESSQLDRHMETAHGVMSHRCPACKQGFVSERALRAHKYAHTLFNCLSCNSSFESLRCYRYHVGRCQGSKAPPDSLYECDYCACGYTKKDSLRSHIQNKHLNVLQFVCQKCGKRSASLAHHKAHEVIHVEEREVFKCHCGARLTTQLGFNLHQRIHSGEKPYQCKTCGERFLSASRRLDHVKRRHMNSEDMPHKCRECSANFIRPSLLRRHYKVAHGVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -