Pgig001783.1
Basic Information
- Insect
- Papilio gigon
- Gene Symbol
- ZFY
- Assembly
- GCA_027563995.1
- Location
- JAODUI010000009.1:6653881-6655320[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.092 13.4 0.0 2 23 146 167 145 167 0.97 2 11 9.3e-05 0.0067 17.0 0.5 1 23 173 196 173 196 0.96 3 11 2e-05 0.0015 19.1 2.5 1 23 203 225 203 225 0.98 4 11 6.5e-06 0.00046 20.6 1.0 1 23 231 253 231 253 0.96 5 11 4.3e-06 0.00031 21.2 0.4 1 23 259 281 259 281 0.98 6 11 0.0026 0.18 12.4 5.0 1 23 287 309 287 309 0.98 7 11 1.4e-05 0.001 19.6 0.2 3 23 317 338 316 338 0.97 8 11 0.00085 0.061 14.0 0.9 2 23 344 362 343 362 0.85 9 11 0.0021 0.15 12.7 0.8 1 23 368 391 368 391 0.95 10 11 0.28 20 6.0 0.3 1 23 397 422 397 422 0.94 11 11 8e-06 0.00057 20.3 1.1 1 23 428 451 428 451 0.97
Sequence Information
- Coding Sequence
- ATGGATTTAAATTTGTGTAGAGTGTGTTTAGATAAATCTGCAAGCATTTCTGTATTTAATAAAGAAAATGACATTCAATACAGTGTTAAAATAATGCGGTGCGTCAATATAAACATAAGTGAAGAAGACGAATTACCAAAAATGTTGTGTTCGAGGTGTGTCGCCGAGCTCGCTATATGCTACCAGTTCGTGGAGAAATGTGAAGCTTCAGACAAAACATTACGGTCATTATCCACCGACTATTTCAGCCAAATAGAAACAAAAATTGAAGTCGAAGTAAAGCTTGAAAACGTTAAAAACGAATTCGATAATGAGTATGATTTGTCAGATGCAGTTTCTGAACATTTGCGGAATATCGATAAAAAGAAGGGTAAAAGAAAAGAACGAAAAAGACTGTTTAAAAAAAAGGTGCGGAGAACCAAAGCTccacctatacagtgtgttatttgtggtctacttgttataagtccatcggcaatgcaaaatcatatgcgtatccacactggagagaaaccgtttgattgcacactttgcgacgctaagtttcgtacgaagggtgcaatgaagcggcacgtcgccacctaccattgcgagcgcgaaaggaaattcacctgcgaaacatgcggccacagcttctttagaaaaaacgatattatcacacacatgagagtccactcgggagagaggccctatctctgcccattttgttcgcagcgttttcggcaggcggcgtctttgatacgacacaagaggacgcacacgggcgaaaaaccatattcctgtccaatatgtgacaagaaatttggtgacaaaaatctcgtccagaaacaccaaagtgtgcacagtgaggtgaggaatttcagatgtcacctatgcagcaagtgcatgaaatccaagactgcactaaatgcccacctcaacttgcatacaaatgaaaagcagaacatttgcagtttctgtggcatggcctttgcaatgaaaggcaacttGCAGACACACATTCGGCGAGTGCACTCGGAGAAGTCAGGGCAGTGCAGCATCTGTTTAAAGACTTTTTCAAACCTGGAGGTTCATATGCGCAAACACACAGGCGAAAAGCCTTTCACATGTGGGTTGTGTAATGCAGCATTCGGAGTGAAGCGGAGCCTGGCTCACCATATGATGTTCAAGCATGAAAATGCTGAGAAGTTTAAATGTTCCATAGGAGAATGCATTAAAACGTTCCCCACTGCCACAATGCTGGAGTTCCATCTGCTAAAGCAGCACACCAACCACACTCCGTACATCTGCCAGTATTGTTCGCGAGGGTTCTTCCGCACTAGTGATCTCTCCAGACATATTAGAGTTAGTCATGTGGACACACAAATTAAACCAATATCTTTAAAACCGATTGTTGTTAAGCCATGCACGCTACAATACCCAGTTCCTAATATCATGTAG
- Protein Sequence
- MDLNLCRVCLDKSASISVFNKENDIQYSVKIMRCVNINISEEDELPKMLCSRCVAELAICYQFVEKCEASDKTLRSLSTDYFSQIETKIEVEVKLENVKNEFDNEYDLSDAVSEHLRNIDKKKGKRKERKRLFKKKVRRTKAPPIQCVICGLLVISPSAMQNHMRIHTGEKPFDCTLCDAKFRTKGAMKRHVATYHCERERKFTCETCGHSFFRKNDIITHMRVHSGERPYLCPFCSQRFRQAASLIRHKRTHTGEKPYSCPICDKKFGDKNLVQKHQSVHSEVRNFRCHLCSKCMKSKTALNAHLNLHTNEKQNICSFCGMAFAMKGNLQTHIRRVHSEKSGQCSICLKTFSNLEVHMRKHTGEKPFTCGLCNAAFGVKRSLAHHMMFKHENAEKFKCSIGECIKTFPTATMLEFHLLKQHTNHTPYICQYCSRGFFRTSDLSRHIRVSHVDTQIKPISLKPIVVKPCTLQYPVPNIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01143281;
- 90% Identity
- -
- 80% Identity
- -