Pgig020028.1
Basic Information
- Insect
- Papilio gigon
- Gene Symbol
- -
- Assembly
- GCA_027563995.1
- Location
- JAODUI010000021.1:985996-998892[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0093 0.67 10.7 0.4 1 23 68 90 68 90 0.96 2 18 0.81 58 4.6 0.0 2 23 114 136 113 136 0.91 3 18 0.0022 0.16 12.7 1.1 1 23 159 181 159 181 0.98 4 18 0.00053 0.038 14.6 0.4 3 23 187 207 186 207 0.97 5 18 0.0014 0.1 13.2 2.8 2 23 215 237 214 237 0.96 6 18 0.005 0.36 11.5 1.7 1 23 243 266 243 266 0.96 7 18 0.011 0.8 10.4 2.3 1 23 272 295 272 295 0.93 8 18 0.012 0.84 10.4 0.2 1 23 301 323 301 323 0.96 9 18 0.24 17 6.2 1.7 1 23 573 596 573 596 0.91 10 18 0.0006 0.043 14.4 0.9 2 23 622 643 621 643 0.96 11 18 0.01 0.76 10.5 2.4 1 23 665 687 665 687 0.98 12 18 1.2e-05 0.00084 19.8 0.2 1 23 691 713 691 713 0.98 13 18 0.00027 0.02 15.5 1.5 1 23 718 741 718 747 0.96 14 18 0.0046 0.33 11.6 1.2 2 23 748 770 748 770 0.97 15 18 0.00065 0.047 14.3 2.8 1 23 776 799 776 799 0.97 16 18 2.1e-05 0.0015 19.0 3.9 2 23 806 827 806 827 0.97 17 18 7.6e-07 5.5e-05 23.5 0.6 1 23 833 855 833 855 0.98 18 18 0.0011 0.079 13.6 0.1 3 23 862 883 862 883 0.97
Sequence Information
- Coding Sequence
- ATGAAACAGTTAACTGAAAAAATAAGATTTCCCAAGTACACGGTGCGACGGTTTAATAGAGAAATTTTCTTTTTGTTTTTAGGAGCCAAGGATAGCATTGTTAAGTTGAAAACGGGGCGCAAGCTTAACGATGTCAGGGATAATGCAACTATTATTATAGAGTGCTCCAACGTGTGCCCCTTTAGGTGGAGATGGGGGAATTTTATTTGCGCTTATTGTCCCACCTCATTTGGAGACTTTAAAGGCTTCAGAGAACACACGGCCAGACATTCGAAAATGGAAGAAGCGGCGAGGCTGTCGCGACCCGTCGAGTTTACGAAAGCCGAGGTCTCTGACCTTCAGTGTGAATTGTGTTCGCAGAAAGCTGAAGATCTAGACCAATTAGTCGAACATTTGATTGACGTTCATAATAAGCCCATAGTCAAATACGAATACGGCGTAGGTATCTCACCGTTTTATCTTAACGGTGATGAGTACATCTGCACTAAATGCGGTGAACTATTCGACCTGTTTACTAAACTAAACTCTCATATGAATAAACATTCAACTGATAATATATGCTTCAAATGCGGAAAGACTTTCTCCGGTCCGATTCGACTCAAGTCGCACCTCGTCACACACGAATTGTCAGGGGATGATTGCAAATGTACAAAATGTGGTGAAACATTCGCGAACCTCAAACTAAGGTCGACGCACATGTCGACCGTGCACAAGCGCAAGTTGAGATATAGGTGCACCTACTGTAACGAGAAGTTTAAAGAATACAATGATAGAGCAAAGCATCTCGAAAAGGTCCACGATAAAAAACGAGAGCATGCCTGTCATCTTTGTCCGGCCGTGTTCTCATCATACAATCAGCGGACGAGGCATATTCAGTTTGTTCATTTAAAAGTTAAGCCTTTTCAATGTCAGGTGTGTCCGTACAGATCTTCGACAGCGGCGCTGATGAGGAATCACGCTgtgaagcacgaagGATCGAACAGTACGGATATACAAGCGACAAAAAGGATTGTGCCCTTGTTCCAAGTGGATTACGACCGTAGCCTGTGTAGGCCGCTGGGCACTGTTACGAACTTTAAGAAGGTGCTCGCGATGGCCCGGCTGAGCGGCGAGGCCCTTGTGTCTCGGAGCCCTTCGCCTATATACATGGACCAACCCTCGCCTCGAATTGACCACGACATCATGGATATCCAATCAGTACATCTCCAGTCACAAATACCTCAAAAGAATGCCGATAACCGACAGAACGCACTCACTCTATTCGAATTCTCTACCGTATATCCGTTTGTATACGGAGTCATCCATGTAACAGACTCATCGATAATCCTCAAAGACGAAGATGGATCTGATATTAAATTAACAATCCTTAAGAAACCCATATCCATTGATAATTTAATTATTGAAAATGAAGAAACTGATATGCCCATCGACAAAACTAAAAACACTATTAAAATTGTAACACCTAAAAAAATAAATCGGCAAATAAATGTATCTGAAGAAAATTCGTCTACGTTAATATTTTTGAAGGAGCCAATCTCTATAGATAAAATTGGGAATGGAACTAGATTGTCGTTCGGAAATCAAACTCTGAAAACTGTTGCAACACCGAATATATCACGAAGAAAGAGAAATGAAGATTCTCAAATGTGGATACGAAACGCGTTAACAATTTTTGAGTTCTCCTATGTGTTTCCGTTTACATATGCAAGAAATAAATTCAAATGTTTCACTTGCACTAAAGAGTTTCTCGATTCAAACATGTTAAGAGAACATTCACTAAACAATCATAACATCGAAGAATTGAAGCTGGAGTTGAATAAGAAGTTTCAAGACAATACGTTAAAAGTTGACGTCATACAACTGCAGTGTAAACTTTGTCAAACTACCCTCAGCAATTTAAATAATTTGAAAGTTCATCTTAAAGAACACGGGAAAGACATCGACCCGTTCTACCAGGATAATATAATACCATTTAAATTAGGTGGTGATAGTTACCATTGTCAGATTTGCGATGAAAGTTATCATTTGTTACGATTGTTAATTATTCACATGAGTAAACATTTCAACAACTACAGTTGTGAAATATGCGGCAATGTGTTCGTTTCTAAACTATTGCTTAAAAGGCATTTACAAGTACATAAAATCGGGAGCCATCCATGCGAAAAATGTGATAAGATCTTCACAAATTCAGCGAAAAGAATAAACCATATCAGAGCGGTGCATTTAAAGCAGCACGTGAGAACATGCCCATTTTGCCCCGATAGATTCAGCTCGAATTATCAACGTAATAAACATTTGAGAATAACCCATAATCAAGCGACGAAGTTCAAATGCGAGACATGTGGAAGACAGTTTTATTTGAAGTATCAACTGTTCCTTCACAAAAAATCCGTCCACATGCGGGAGCGTAACGAGGAGTGCACCATATGTCACTTTAGATTCTTCTCTAAATCCAGTCTGACAAGGCACATGATAACACACAGCAGTGATAAGAATTTCAAATGCGATGTATGTGGGAAAGCTTACGCTAGGAAGAAAAATCTTCGAGAACACGCCAAGTCGCACCAGCTAGTAGCAAACGGCTGTTCCGTCTGCGGTCGTTTATTTAACGACCAGCCCACCTTGATGGCTCATATCAATTTAAATCATGATATCCTATAA
- Protein Sequence
- MKQLTEKIRFPKYTVRRFNREIFFLFLGAKDSIVKLKTGRKLNDVRDNATIIIECSNVCPFRWRWGNFICAYCPTSFGDFKGFREHTARHSKMEEAARLSRPVEFTKAEVSDLQCELCSQKAEDLDQLVEHLIDVHNKPIVKYEYGVGISPFYLNGDEYICTKCGELFDLFTKLNSHMNKHSTDNICFKCGKTFSGPIRLKSHLVTHELSGDDCKCTKCGETFANLKLRSTHMSTVHKRKLRYRCTYCNEKFKEYNDRAKHLEKVHDKKREHACHLCPAVFSSYNQRTRHIQFVHLKVKPFQCQVCPYRSSTAALMRNHAVKHEGSNSTDIQATKRIVPLFQVDYDRSLCRPLGTVTNFKKVLAMARLSGEALVSRSPSPIYMDQPSPRIDHDIMDIQSVHLQSQIPQKNADNRQNALTLFEFSTVYPFVYGVIHVTDSSIILKDEDGSDIKLTILKKPISIDNLIIENEETDMPIDKTKNTIKIVTPKKINRQINVSEENSSTLIFLKEPISIDKIGNGTRLSFGNQTLKTVATPNISRRKRNEDSQMWIRNALTIFEFSYVFPFTYARNKFKCFTCTKEFLDSNMLREHSLNNHNIEELKLELNKKFQDNTLKVDVIQLQCKLCQTTLSNLNNLKVHLKEHGKDIDPFYQDNIIPFKLGGDSYHCQICDESYHLLRLLIIHMSKHFNNYSCEICGNVFVSKLLLKRHLQVHKIGSHPCEKCDKIFTNSAKRINHIRAVHLKQHVRTCPFCPDRFSSNYQRNKHLRITHNQATKFKCETCGRQFYLKYQLFLHKKSVHMRERNEECTICHFRFFSKSSLTRHMITHSSDKNFKCDVCGKAYARKKNLREHAKSHQLVANGCSVCGRLFNDQPTLMAHINLNHDIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -