Pgig017128.1
Basic Information
- Insect
- Papilio gigon
- Gene Symbol
- -
- Assembly
- GCA_027563995.1
- Location
- JAODUI010000011.1:2906914-2909097[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.5e-05 0.0039 17.7 0.3 1 23 120 143 120 143 0.98 2 13 7.4 5.4e+02 1.5 1.1 5 20 233 248 230 250 0.88 3 13 0.0017 0.12 13.0 1.0 2 23 280 301 279 301 0.97 4 13 0.0002 0.014 16.0 4.5 1 23 312 334 312 334 0.98 5 13 0.00078 0.056 14.1 2.8 1 23 342 365 342 365 0.96 6 13 5.5e-05 0.0039 17.7 0.8 1 23 371 393 371 393 0.96 7 13 5.1e-07 3.6e-05 24.1 1.2 1 23 399 421 399 421 0.98 8 13 2.5e-08 1.8e-06 28.2 1.6 1 23 427 449 427 449 0.96 9 13 3.6e-05 0.0026 18.3 0.6 1 23 455 477 455 477 0.98 10 13 2.1e-07 1.5e-05 25.3 0.8 1 23 483 505 483 505 0.98 11 13 4.6e-05 0.0033 17.9 0.8 1 23 511 533 511 533 0.98 12 13 8.4e-05 0.006 17.1 3.2 1 21 539 559 539 561 0.96 13 13 3.7e-06 0.00027 21.4 0.2 1 23 567 589 567 589 0.98
Sequence Information
- Coding Sequence
- ATGGATATTTCAATTAAAATAGATAAACTAGATCTCGTTTGTAGAATATGTCTATGCAAGAGTGTAAATATGAAATTGTTAACAAGCAAAATGGAAAGTGACGATAGGACAATAGCAGAGGGTCTATCTTTCATATTAAATCTTTACATTTCTGAAAGTGATGCGTACGCAAAACAAGTCTGCGAGGAGTGTTACGCAGTTATACTTAAATTCGATCAGTTCAAGAAGCGATGTATACATTCGGAAGGGTCTTTAGACGATGTGTATTATGCCGAAAGCAATGTTAACATTCCAGTGAGTCAGGACAATAAATCCAGTAAAGAAGTGTCTATTACCAAGTTTTGTATGGATGAACCTTATCAGTGTAGTGTTTGTTCTAAGAAATTCTCTGATTTGCTTCTCCTAGAGTCCCATGTGCTAACTGACCACAGTTTTGCCAATAACCAGCTTATGAAAGATGTAAATTTAACTGAGGATAATACTCAAGATCCTGATTATCCAACAAATACATCACCATACAATAATGGTGAACTAGAAGAAGATACTGAATATAAACCTAAAAATGAGATCAATGATGGTTTTGAATTTACAGACAGCACTGTCGACTTACAGAGACAAATACTAGATTGTAATAAATTAAAGGATGAGGTACAAGTAACAGAACAAGTTACTACCTCAAATGTATTCTATAAGTGTAAGTGTGAGACTATATTTGATAATTGTGATAAATACAAAGAACATTTAGACAAAAAAACGTGTAAGGAGATATTCAAAAGTGACAGAATAACAAGGGTACGTAAAGTAAAAGGTAAAAAGATAGATGAAAAAGTTGAATCAGTCTGTCCTAAATGTAACGTTAAATTTATCTCTCTCAAAAGATATAAAATGCACCTCCGTATGCATCGAGTTGAAAACACAAGTCCTGCCGATAAATTTAGTTGTTCACTCTGTTTGAGAAGATTTACATATAAGCATGCATACACTGCTCATATGAAGACTCACAAGGTGAAGGAGGGGGTCAAGTTTATTTGCAACACTTGTAAGAGAGAGTTTCAGCACCAGGCACATTTAGATAACCACATACTGTCCGTACACACAAGAGAAACCGGTTTCAAATGTGAGTATTGTGCTAAAAACTTTTCGACACAAGAAAGCCTAGACAATCACCGCGAAGCTCATAAAGTCGAAAAGCGACATCAATGTCCAATGTGTGACAAAGCTTTTTATGTGTTATCTACATTAAAGGATCACATACGGACTCATACGGGAGAGAAGCCTTTCTTGTGCTCCGATTGTGGCAAGGGCTTCAGTCAGAAGAACAATCTAACTCAGCATATGCGGCGACATCAAGGACTGAAGCTCTTCAAGTGTGATAATTGTGAACAAAGGTTCGTGTCAAAAGGCGAATTGGTGGCTCACAATCGGAAGCACAGCGGCGCGCATCCCTTTGTATGCGACGAGTGCGGAAACAGCTTTACCACGTCCAGTTCTCTGAGCAAACACCGCCGCATACACACCGGAGAGAGACCCTATGCCTGTGACCTCTGCGACATGAAGTTCACCGCGTCAGGGACGTTAAAGAACCATCGGCGCAGACATACTGGTGAAAAACCATATCAATGTTCACATTGTGAGAAGGCTTTTGCCCAGCGCCAGGACCTGGTATCACATATACGTTGCCACACAGGTGAGCGTCCCTTCGTCTGTTCCACCTGCGGGCAAGCGTTCCGCAAGGCCACCGCGCTCAAGGCACATCTCAAAATACACGAAAAAGATACTATATACTTGCAGAAGGATGTGACCTTATCAATCATTCATAACGCAAACGCATTGATCGCGTGA
- Protein Sequence
- MDISIKIDKLDLVCRICLCKSVNMKLLTSKMESDDRTIAEGLSFILNLYISESDAYAKQVCEECYAVILKFDQFKKRCIHSEGSLDDVYYAESNVNIPVSQDNKSSKEVSITKFCMDEPYQCSVCSKKFSDLLLLESHVLTDHSFANNQLMKDVNLTEDNTQDPDYPTNTSPYNNGELEEDTEYKPKNEINDGFEFTDSTVDLQRQILDCNKLKDEVQVTEQVTTSNVFYKCKCETIFDNCDKYKEHLDKKTCKEIFKSDRITRVRKVKGKKIDEKVESVCPKCNVKFISLKRYKMHLRMHRVENTSPADKFSCSLCLRRFTYKHAYTAHMKTHKVKEGVKFICNTCKREFQHQAHLDNHILSVHTRETGFKCEYCAKNFSTQESLDNHREAHKVEKRHQCPMCDKAFYVLSTLKDHIRTHTGEKPFLCSDCGKGFSQKNNLTQHMRRHQGLKLFKCDNCEQRFVSKGELVAHNRKHSGAHPFVCDECGNSFTTSSSLSKHRRIHTGERPYACDLCDMKFTASGTLKNHRRRHTGEKPYQCSHCEKAFAQRQDLVSHIRCHTGERPFVCSTCGQAFRKATALKAHLKIHEKDTIYLQKDVTLSIIHNANALIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01148258;
- 90% Identity
- -
- 80% Identity
- -