Pgig001298.2
Basic Information
- Insect
- Papilio gigon
- Gene Symbol
- Zfy1
- Assembly
- GCA_027563995.1
- Location
- JAODUI010000009.1:812993-818221[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.3 22 5.9 0.4 1 23 171 194 171 194 0.94 2 26 1.2 88 4.0 5.0 1 23 238 260 238 260 0.96 3 26 0.25 18 6.2 0.9 2 23 301 323 301 323 0.92 4 26 3.7e-06 0.00027 21.4 1.8 2 23 347 368 347 368 0.97 5 26 0.00015 0.011 16.3 0.5 1 23 375 398 375 398 0.94 6 26 0.0023 0.17 12.6 0.1 1 23 404 426 404 426 0.97 7 26 0.00052 0.038 14.6 0.5 1 23 432 454 432 454 0.97 8 26 1 72 4.3 2.2 1 23 616 638 616 638 0.93 9 26 4.6e-05 0.0033 17.9 2.8 2 23 645 667 644 667 0.92 10 26 5.3e-05 0.0038 17.7 2.8 1 23 673 695 673 695 0.97 11 26 3.3e-07 2.4e-05 24.7 3.4 1 23 701 723 701 723 0.98 12 26 5.1e-05 0.0036 17.8 0.7 1 23 729 751 729 751 0.98 13 26 0.0012 0.086 13.5 5.3 1 23 757 779 757 779 0.94 14 26 0.00024 0.017 15.7 1.0 1 23 785 808 785 808 0.95 15 26 3.5 2.5e+02 2.6 0.6 3 23 869 888 868 888 0.95 16 26 0.0028 0.2 12.3 3.2 1 19 894 912 894 917 0.91 17 26 6.3e-07 4.5e-05 23.8 3.3 1 23 923 945 923 945 0.98 18 26 2.3e-05 0.0016 18.9 0.1 1 23 951 973 951 973 0.98 19 26 0.013 0.96 10.2 0.1 1 23 979 1001 979 1001 0.95 20 26 0.036 2.6 8.8 0.9 6 19 1011 1024 1009 1026 0.94 21 26 0.0096 0.69 10.6 1.5 2 23 1267 1289 1266 1289 0.95 22 26 0.00072 0.052 14.2 0.6 1 23 1294 1317 1294 1317 0.92 23 26 1.4e-05 0.001 19.5 1.4 1 23 1324 1346 1324 1346 0.97 24 26 0.00036 0.026 15.1 0.9 2 23 1353 1374 1352 1374 0.96 25 26 4.9e-05 0.0035 17.8 4.4 2 23 1381 1402 1380 1402 0.97 26 26 0.021 1.5 9.5 5.0 1 23 1407 1430 1407 1430 0.96
Sequence Information
- Coding Sequence
- ATGAATAACGACACTGAAAAAATATATCTAACAAATCCTTCTAAAGAACTTCAAACGCAAGATGAAAATCAACCAGGGACGAGTCAAATCAACCTCGAAAATATTGAAGATTTTACAAACGTCTGTCGCACATGTGCAGCTGTTACAGAATTTGTTGTACCGATCTTCATCGGGGAAGGATTACAGAATAAATTAGCTGATAAAATACACAAATATCTTCCTATTCAAGTGTCCGAAGAGGATGTATTACCGCAGGTGGTCTGTTACCAATGTGTCAGCACTCTTATATCTTGGCACGACCTTGTGCAGAACTGTGCGCAGGCCAACGCCGCACTCCAGACCAAGCTTACCGAACTTCTTGCGGATGAGAATAGTACAATCAATGTAAAAAGATATGAAATGAAAACTAAAGGAAAGTTACAAACCAAACTATCTGTGTCAAATGTAAGAGATATTATAGTCAAAACTTTTCAAATAGCCGATCCAGATTTGATTAATTCAGGATTTGAATTTCTATGTGAAAAGTGTGATGATCAATTTCCTACACTAAATAGCTTTGTTGAACATCTCCAGTCACAGCATGACGCTGACTGCAGGGACGTCACAACTGCAACGTTCATAAAAGAAAATGTATCCATTGTTGAAATGTTAGCAGAAGAACCGACATCAGCCGTTGAACCAGACAAAGAGTTAAATGTTAAATTAAAAAGATTTCATTGTCCCTTTTGTCAAAGTTCATTCTCATCACCGACACGACTTATCTGCCATTTGAACAAGCACGTCGAGGTCTGCATCGGAAACGGAGTCGACTGCTGCGGCACCTTATATTACGATACAAAACTATTCGTCAAACATCTAGAGAGCGCTCACGTCACGCACACAGGCACGAAAAATGAAAACACATGCAGAAGTTGCGGCTTCACTGCTCGCGACAAAGATGAACTTAAAGAACACAGCACCAAACTACACGTCAAAGATGTTGTGCAAAACAAAGATGACACAAAGCAACGCGACAAATGGCAGAAGTACATACCGGCAGTGTGTTCCGAGTGCAACAAGACGTTCTCGAATAAATACAACATGCTGATGCATATGAAAAGTCACAAAGGCGTCGCTGAGGAATATCCCTGCGACAGATGTAGTAAAACTTACAAGAGTAAAGCCAGTCTCAAGAACCACGAAGAAATCGTTCACAAGGGACTCCTCAGCTTCGTGTGTTCGTACTGCGGCGAAGCTTTCCCCACGCGGGTCGCGCGCGACGTCCACAAGCGGATACACACCGGGGACAAGCCGTACGCCTGCCAGTACTGCGACCGATCTTACCGCGCCAAAAACACACTTGATCGTCATTTAGAAATACATTTAAACGTTCGCAACTACGAATGGACACCCAGCAGCGATAATTACGACAGTGCGTATCGGTCAATCGTTTATGGAGATGAAATAAAAAATGAATCCAGTAAAAATATTAAATTGGACAATTTATCAGCGTCGGGCGAAAGTGTCGATGTTTCCGACCAATCAGACACTGACGATCGCCCTCTAGCTGCGATCGCAACTGAGAAATCTAACGATTTGTATAAAAGCTTTTATAACGCTTTAGTTAATTTTAGAAATCATTACGTGGCGGAACACGAAAGAAGGACAAACGATTATTCAGGCTTTTCGGATTCCAGCGACTCCGAAGTGATACTGGAGGACACCGGAAGAGAAGACGGTGAAGTCGATGAAGCTGTCAATAATTTTGATGATTTGACAGAATGGAATATGCGCAAAGGAAAAATGGACGAAGAAACCAGACTGGAATTGAACGAGGTCCAAAGAAAAATCGACGGAAAGGTTTTctttgcgtgcaaagtgtgcgacaaaaatttgagcaccgtgcacacttatatatttcacaaacgtattcacacgggcgagagaccctgcgtgtgtcacgtctgcggcaaacagttcagaacgccgaacggtctgcagaggcacctgacggagacgcaccagcggctgcgccggcactcgtgcagcttctgccctaagaacttcgccaacacgcagaacctgaagcagcatctgcgcatccacaccggcgagcggcccttcgtctgcccgcactgcggcaagcgattcacgcagagcggctccctgcacgtgcacttaaaaacgcacagcgaacagtacccgttccagtgcgcagagtgcggcgccaagttccgcctgcggtccggcctcacgcggcaccggctgaagcacacgggcgagcggccgcacgtctgcgtgcactgcggcaagggcttccgtcagaagcacgacctgcacagccacgccctcgcgcacaccaatcccaagccgcacgcctgcgtcgtgtgtggcGCCGCCTTCAGGCAGCCGCGGGCACTCAAGCACCACTATAAGAGAGTGCACCAAAGCGAACCTCCCAAAGAAATTGTCAACGATCCCGTTACAATAAAAGACATTAAGGTCGAAGTCGAAGTTGATGCAAATGAGCTCGAAAGTGACGCCGCCCAGCACACACAGACAGTAACACGGAACATTACTAACCCTCAAACAATAACAAACGAGGAGGGCAAAAAGTACGTCCTGTGCAGTGTTTGTAATAAGAATATATCATTCGGGTCGTGGAAACGGCACACGCGGGCACACGCCGGAGAGAAAAGATACAGTTGCCACACTTGTGGGCTGGCGTTCCATGACAGCGGGAACCTGGCTCGCCACTGTAAAGCCATACATGCGAAATACCGACCTTTCTCTTGTACCGTCTGCGAAAAAACATTCTCGAGGAACGGTCACCTTCGAGACCATATGAAGTCACACTCGGAGAGCAGGGAATATGTCTGCGACATTTGCGGCAAGGCGTCGAAGTCCAGCGCGGCGCTGCGCATGCATCGGAAAATTCACCAAGAGGAGTTCAAATTCACGTGCATAAAATGTGGGGCGAAGTTCAAACGAGGCGGGGAACTGAGGGCGCACGTCACCGTCCACACAGGAGAGAAAGCCTACTCGTGCTCCTGCGGTAAATCTTTCCGTCTCCGCAGTCAACTCAATGCTCACAAATTCGCTGGACTAGCCATTGGGTCCGACCAGCATATCGATGGCTCCATTAACAGCAAAATTTGCGAGTACTGCGGCGTCAGACAGGGCGAGGAGGATTACCCGGAGCACTTGATCTCAATGCACTCGGACGAACTGCTTCCGTTCCGCGAACGCGATCCCTTCCAATACGTCATTAGCGACGACGATGACGTGTACGAGGACGACAAGCACGCCAAGAACCCGCTGAAGACTCATTTCTTGGAAAAACCGAAAAAGGCAGAATCGCCCAAAAAACTCATGAGTGCAGGTGCAAAAAAGTCACGAGATCCCTCGGAAAAAATTGTAAAAACAAATTCCACGAAAAAAATTTCAAAGACGAAATCTCCAAAAAAAGCGAAAAATTTAGAACCCGCGAGCAAACCGACGGAGAAACAAAAGTGCCAAACTAATAATGCCGAAATATGCACTCCTGAACCTAAACTCACTGATAACAAGGAAACCATACGAAAAAGGAAAAGAAAACCAAGTAGTTTACAGGTCACCAAGCAACATATATCAGACGCGGTCTCCATAGCGATCAAAAACTTGCAGGATAACCCTCGCAACAAGAAGCCGGCGCCGGAAGTGAGCGAGGACCTCGACACGCCGCTGGAGATCAACGGGCCGAGCAAGCAGGTCGACAACATCGAGATCTTCATGGAGAGCGTCGACAAACTCAAGGTCAAAGACAAGATGGATCGGCTCCGCTGCAAGTTCTGCCCGCGCGAGTTTACGGCCAAGTCCAGCTACTCCTACCACGTGAGGAATACTCACCTCTGCCAGGAGTTCGAGTGCCACGTGTGCGACAAAAAGTTCCGCAACAAGCAAATCCTCGCACAGCACGTGGCGGTCGTCCACGAGGGCAAGGAGAAGTCCTTCGAGTGCAAGTACTGCTTGAAGACGTTCAGCACGCAGGGGAACCTGTACAGCCACGAGCAGATCCACCTGGACACGAAGAAGTGGCCGTGCGCGGAGTGCGGGCGCGCGTTCCGCTGGCGCACGCACCTGATGCGGCACCTCAAGCGGCACTCGGAGGAACCGCGGCTGGTGTGCCACACGTGCGGCCGACGCTTCAGAGTGGCCTGCGACCTGCGCCGCCACCAGAACACGCACACCATCCACTACCACACCTGCGAGCACTGCGGCCAGCGCTTCTTGCAGCGGCGCTACCTGCGCGTGCACCTCATCAAGAAACACAGTGAAAACATACCTGGAAACTAA
- Protein Sequence
- MNNDTEKIYLTNPSKELQTQDENQPGTSQINLENIEDFTNVCRTCAAVTEFVVPIFIGEGLQNKLADKIHKYLPIQVSEEDVLPQVVCYQCVSTLISWHDLVQNCAQANAALQTKLTELLADENSTINVKRYEMKTKGKLQTKLSVSNVRDIIVKTFQIADPDLINSGFEFLCEKCDDQFPTLNSFVEHLQSQHDADCRDVTTATFIKENVSIVEMLAEEPTSAVEPDKELNVKLKRFHCPFCQSSFSSPTRLICHLNKHVEVCIGNGVDCCGTLYYDTKLFVKHLESAHVTHTGTKNENTCRSCGFTARDKDELKEHSTKLHVKDVVQNKDDTKQRDKWQKYIPAVCSECNKTFSNKYNMLMHMKSHKGVAEEYPCDRCSKTYKSKASLKNHEEIVHKGLLSFVCSYCGEAFPTRVARDVHKRIHTGDKPYACQYCDRSYRAKNTLDRHLEIHLNVRNYEWTPSSDNYDSAYRSIVYGDEIKNESSKNIKLDNLSASGESVDVSDQSDTDDRPLAAIATEKSNDLYKSFYNALVNFRNHYVAEHERRTNDYSGFSDSSDSEVILEDTGREDGEVDEAVNNFDDLTEWNMRKGKMDEETRLELNEVQRKIDGKVFFACKVCDKNLSTVHTYIFHKRIHTGERPCVCHVCGKQFRTPNGLQRHLTETHQRLRRHSCSFCPKNFANTQNLKQHLRIHTGERPFVCPHCGKRFTQSGSLHVHLKTHSEQYPFQCAECGAKFRLRSGLTRHRLKHTGERPHVCVHCGKGFRQKHDLHSHALAHTNPKPHACVVCGAAFRQPRALKHHYKRVHQSEPPKEIVNDPVTIKDIKVEVEVDANELESDAAQHTQTVTRNITNPQTITNEEGKKYVLCSVCNKNISFGSWKRHTRAHAGEKRYSCHTCGLAFHDSGNLARHCKAIHAKYRPFSCTVCEKTFSRNGHLRDHMKSHSESREYVCDICGKASKSSAALRMHRKIHQEEFKFTCIKCGAKFKRGGELRAHVTVHTGEKAYSCSCGKSFRLRSQLNAHKFAGLAIGSDQHIDGSINSKICEYCGVRQGEEDYPEHLISMHSDELLPFRERDPFQYVISDDDDVYEDDKHAKNPLKTHFLEKPKKAESPKKLMSAGAKKSRDPSEKIVKTNSTKKISKTKSPKKAKNLEPASKPTEKQKCQTNNAEICTPEPKLTDNKETIRKRKRKPSSLQVTKQHISDAVSIAIKNLQDNPRNKKPAPEVSEDLDTPLEINGPSKQVDNIEIFMESVDKLKVKDKMDRLRCKFCPREFTAKSSYSYHVRNTHLCQEFECHVCDKKFRNKQILAQHVAVVHEGKEKSFECKYCLKTFSTQGNLYSHEQIHLDTKKWPCAECGRAFRWRTHLMRHLKRHSEEPRLVCHTCGRRFRVACDLRRHQNTHTIHYHTCEHCGQRFLQRRYLRVHLIKKHSENIPGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -