Pgig005668.1
Basic Information
- Insect
- Papilio gigon
- Gene Symbol
- SCRT1
- Assembly
- GCA_027563995.1
- Location
- JAODUI010000025.1:5608622-5611215[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00044 1.1 9.5 0.2 12 38 150 173 144 178 0.87 2 5 0.0096 24 5.2 0.9 16 39 185 205 176 213 0.68 3 5 0.0055 14 6.0 1.0 18 28 213 223 206 234 0.86 4 5 5.1e-05 0.13 12.5 0.3 15 41 238 261 230 264 0.85 5 5 0.007 17 5.6 1.9 11 30 264 287 261 293 0.73
Sequence Information
- Coding Sequence
- ATGGCGAACCCGTCTTTGGATCTCCCGCCGTTGATCCCTCCGATACCCGTCGAGGTGGTGCCGAATCCTGAAAATCCTGGACAGGCAGCGAAAGATACTGAAGGCCCCGGTACCGCAAACATTCCACCAGAAAGTGGCGATTATATTGAAGAGCAGCCCATCGGCGCGTCAAACTTACTTTCGCCGGAAGATACAGAGGCCGTATTAACATTGGTTACGCTGGCGCAGAATCGTAGGCAGCCACCGGATAACACAACTCAGGCATCTGAAGAAAATTATACTGAATCTCCACTACAAGAAGATCCAAGATCAAATCCATCGACAGAGAAGGGAGCTGATTCTGTATCGAGTATAAATCATGCATTGCGTTCTTCAACTTGGAATATTGAAAAGCGGATACAGGACAACATTGTTGATGACGCAAGCACTGCAGAAGTCACATCTAGCGAGAAACCAACGAAATTCGACTGCGATCAATGTGGTAAATATTACGCGACCTCGTCTAATTTGTCGCGTCATAAGCAGACACATCGCAGCTTGAACTCTGAATTGGCGCAGCGCTGTCGCGATTGCAACAAGGTTTACGTGTCGATGTCGGCGCTGGCTATGCACATGCTGACGCACCGCATGCGGCACGTGTGCCGCGAGTGTGGTAAGCAGTTTTCCAGGCCTTGGCTGCTGCGAGGACACTTGCGCCTTCACACTGGTGAAAAGCCCTACAAATGTATCGTTTGCGGAAAATCTTTCGCTGATCGCTCCAATCTTCGTGCCCACCTACAAACGCATTCCCCCGATAAGAAATTCGAGTGCATGCGCTGCAACAAAACTTTTGCCCTGAAAACCTACCTTAATAAACATCACGAGTCGGCGTGCGCCCGTCTCGCCAATAACTAA
- Protein Sequence
- MANPSLDLPPLIPPIPVEVVPNPENPGQAAKDTEGPGTANIPPESGDYIEEQPIGASNLLSPEDTEAVLTLVTLAQNRRQPPDNTTQASEENYTESPLQEDPRSNPSTEKGADSVSSINHALRSSTWNIEKRIQDNIVDDASTAEVTSSEKPTKFDCDQCGKYYATSSNLSRHKQTHRSLNSELAQRCRDCNKVYVSMSALAMHMLTHRMRHVCRECGKQFSRPWLLRGHLRLHTGEKPYKCIVCGKSFADRSNLRAHLQTHSPDKKFECMRCNKTFALKTYLNKHHESACARLANN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01142615;
- 90% Identity
- iTF_01142615;
- 80% Identity
- iTF_01142615;