Basic Information

Insect: Papilio elwesi
Gene Symbol: ush
Assembly: GCA_029641285.1
Location: CM056336.1:1172190-1175691[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.005 0.44 11.5 0.2 1 20 128 147 128 149 0.94

2 9 7.5e-05 0.0066 17.3 0.9 1 23 187 209 187 209 0.98

3 9 0.06 5.3 8.2 0.3 3 20 240 257 239 259 0.92

4 9 0.015 1.3 10.1 3.9 2 21 499 518 498 519 0.95

5 9 0.0051 0.45 11.5 0.2 3 20 548 565 546 567 0.90

6 9 5.7 5e+02 1.9 0.0 2 23 595 616 594 616 0.92

7 9 0.0074 0.65 11.0 1.3 1 23 622 644 622 644 0.99

8 9 0.39 34 5.6 0.7 1 23 682 705 682 705 0.95

9 9 0.21 18 6.5 1.2 2 20 737 755 737 757 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.005	0.44	11.5	0.2	1	20	128	147	128	149	0.94
2	9	7.5e-05	0.0066	17.3	0.9	1	23	187	209	187	209	0.98
3	9	0.06	5.3	8.2	0.3	3	20	240	257	239	259	0.92
4	9	0.015	1.3	10.1	3.9	2	21	499	518	498	519	0.95
5	9	0.0051	0.45	11.5	0.2	3	20	548	565	546	567	0.90
6	9	5.7	5e+02	1.9	0.0	2	23	595	616	594	616	0.92
7	9	0.0074	0.65	11.0	1.3	1	23	622	644	622	644	0.99
8	9	0.39	34	5.6	0.7	1	23	682	705	682	705	0.95
9	9	0.21	18	6.5	1.2	2	20	737	755	737	757	0.92

Sequence Information

Coding Sequence: ATGACGCCAACGTTAAAGCGCCAGATAGAACGCATTAACCCGACCAATCACACGTCGCCCACGAATCgtgAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGTCCGGAGAACCTCATACGCCGAGTTCGGGAGGGGAGAAGGCGGCCTCCAGTGGAGGCGCTTCACCCGCTTCGGGGAGTTCGCCCGCCGCCTCCCCGCCGCGTTTACGCCTCAACACCAGTCTCGCAACGGACCCGGCTCTTGCACCGCAAGCGACTCCGCTAAAACGGGAGCTCCCTTCCCCCTCGCCGCCTCCGCCGCCAAATTTACAACCAAGAGACTACCTTACATTGACGGCCGCTTTTCCCGCAATTATGCCTGCAACGACTCCCCCTGTCTACATGTGCAAACCTTGCGGTATTCGCTATTCTTCTTTAAGCACTCTTCAAGCTCATCAAGAGCACTATTGTTCTAATAGACGAGGTAAACCAGGAGATGGCTCGGAGACGCCTACTGATGCTGCAGCTGACGAATCTAGTAGCGATGCCAAAACGCCACGACCACCTGGGAAACAATACGCTTGTACATATTGTTCATACAGCGCTGATAAAAAAGTAAGCTTAAATCGACATATGCGAATGCATTCATCTTCTCCTGTAAGTAGTGGCACTCCAGTACCGCCACCCACATCCAACGGGGAAACGACGGAAGGTCCCCCAGCACCAGACCGCTACTGTGCCGACTGTGATATTCGCTTTACTTCCATTAAAACTTATCGGGCGCACAAAGCCCATTACTGTAGCACCAGACAAGTGGTCAAACAAGTTTTAGCTGCAGCAAGGGGAGGCTCGGCTACATCCGGTTCGGCGCCGCCGTCCCCGGGGACCACGCCACCCGCGCAAAACCAATATGCCCTCGCGTTACCAACAAATCCAATTCTCATAGTGCCGTACTCCCTCCTGAGAAGTGCTAGCACACTACCAGGAGCGACTCTACCAGATCCAGACACACCATGCTTCTTGTTACCGAACGGAACTTTTCAACCGCTAAGTCGAGCATTACCAAATATAAACGCCGAAGGAAAGGATTCAGAGGTATTAAAATCCGCTAACCGGCCACGCGAACCTCCTCGAGACGGTGCAACGCCGCTGGATCTCAGCGTAAGACGTTCTCCTGAATCTGTTACAGCAGACGAACAGGAGAAAGAAAATAGAATACGGTCTACTACGCCGGAACAAATTGTATGTGCTCCTTCCTTGCCGGGGTCTCCGGGAACACCATCTCCGTCGAGAAGATCCTCTTCGCCCGGAGGTGAAACCTCCCCAAAACGAAGGCGACGAGATTCTAGGGGCCCGACCCCGAAATCAACGAGTGTATCATCTCCACCCGAAGATAAATTTAACCCTATAGTTCCACCGGCCATTCTCCCACCAACTTTAGCATTACGCCTCGCTTCAGAACTTCCCATAACGCCCTCATCTCCTCAAGTTTTAGTAAAACAGGGCGTATCCAAGTGCAAGGAGTGCAATATAGTCTTTTGCAAATATGAAAATTACCGGGTCCACAAGCGGCATTACTGTTCCGCCGGTGGTGGTGATGATCGAGCAAGTCCAGCCCCGCCGGAACCCGGTCCACCTCCACAGTATCGTCAGCTGATTTGCCTGGCTTGCGGAATTCATTTCAGTTCTTTGGATAACTTGACAACGCATCAATCTTACTATTGCACAAAAAGGGAGACCCGTTCGCCTCGAAGCGCGCCCGAAGTGACTCGGCCCAGTTCGGGTCCCGAAGGTGGATGGAAATGTCCCTGCTGCGAGGTGGTGTCGCCCACGGCGGTAGCGGCGCAGCGGCACATGGAGGCGCATGCCGGGGTCAAGGCGTTCCGCTGTACGATCTGCCGGTACAGAGGCAACACATTGCGTGGAATGCGTACACATATACGAATGCATTTCCGTGAGAAGCCCTCTGATCTTCAGGAGGAAAGCTTTATATCTTGCGTGCTAGAAGACGAAAACCGTGAGACGACGTCACCTAGCCCAGCAGTGGGCGGAGAGCGCGTGCACCGCTGCGGTAGTTGTGCGTACACATCCACGTACCGCGGCAACGTGGTCAGACACGCGCGGCTGGTGCACGCCACTGAGGAACCCGAACCTGAGGAGCAGACCTCTCCACTCCCAGCCATCGATATCAAAAAAGAACCGGAAACTGAAGAAGAAACACCCAATTACTGCAAATCGtgtaatatatcatttaaatacgTTAACACTTTTAAAGCTCATAAGCAGTTTTACTGCACCGCAGCCAATCAAGACGCTCCCGCTAATAACAATGTACCCGCACCTCCTCCCGCGCGTGTCAGTGACACACCCGTACTGTAG
Protein Sequence: MTPTLKRQIERINPTNHTSPTNREDEEWGNESEAMSGEPHTPSSGGEKAASSGGASPASGSSPAASPPRLRLNTSLATDPALAPQATPLKRELPSPSPPPPPNLQPRDYLTLTAAFPAIMPATTPPVYMCKPCGIRYSSLSTLQAHQEHYCSNRRGKPGDGSETPTDAAADESSSDAKTPRPPGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPVPPPTSNGETTEGPPAPDRYCADCDIRFTSIKTYRAHKAHYCSTRQVVKQVLAAARGGSATSGSAPPSPGTTPPAQNQYALALPTNPILIVPYSLLRSASTLPGATLPDPDTPCFLLPNGTFQPLSRALPNINAEGKDSEVLKSANRPREPPRDGATPLDLSVRRSPESVTADEQEKENRIRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPGGETSPKRRRRDSRGPTPKSTSVSSPPEDKFNPIVPPAILPPTLALRLASELPITPSSPQVLVKQGVSKCKECNIVFCKYENYRVHKRHYCSAGGGDDRASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSYYCTKRETRSPRSAPEVTRPSSGPEGGWKCPCCEVVSPTAVAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFREKPSDLQEESFISCVLEDENRETTSPSPAVGGERVHRCGSCAYTSTYRGNVVRHARLVHATEEPEPEEQTSPLPAIDIKKEPETEEETPNYCKSCNISFKYVNTFKAHKQFYCTAANQDAPANNNVPAPPPARVSDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01148406;
90% Identity: iTF_01143441;
80% Identity: -