Basic Information

Insect: Papilio elwesi
Gene Symbol: -
Assembly: GCA_029641285.1
Location: CM056364.1:1523575-1532961[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.18 16 6.6 0.6 1 23 344 366 344 366 0.92

2 11 0.96 84 4.4 5.7 1 23 373 395 373 395 0.97

3 11 1.9 1.7e+02 3.4 2.5 1 23 399 421 399 421 0.91

4 11 0.0012 0.11 13.5 0.5 1 23 426 449 426 449 0.98

5 11 0.0035 0.31 12.0 0.4 2 23 454 476 453 476 0.95

6 11 0.055 4.8 8.3 0.3 3 22 490 509 489 513 0.93

7 11 0.21 19 6.4 0.2 2 23 559 581 558 581 0.94

8 11 0.0079 0.7 10.9 2.4 2 23 597 618 594 618 0.92

9 11 7.9e-06 0.0007 20.4 0.3 1 23 624 646 624 646 0.98

10 11 1.2e-05 0.0011 19.8 1.1 1 23 652 674 652 674 0.93

11 11 1.7e-06 0.00015 22.5 0.9 1 23 680 703 680 703 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.18	16	6.6	0.6	1	23	344	366	344	366	0.92
2	11	0.96	84	4.4	5.7	1	23	373	395	373	395	0.97
3	11	1.9	1.7e+02	3.4	2.5	1	23	399	421	399	421	0.91
4	11	0.0012	0.11	13.5	0.5	1	23	426	449	426	449	0.98
5	11	0.0035	0.31	12.0	0.4	2	23	454	476	453	476	0.95
6	11	0.055	4.8	8.3	0.3	3	22	490	509	489	513	0.93
7	11	0.21	19	6.4	0.2	2	23	559	581	558	581	0.94
8	11	0.0079	0.7	10.9	2.4	2	23	597	618	594	618	0.92
9	11	7.9e-06	0.0007	20.4	0.3	1	23	624	646	624	646	0.98
10	11	1.2e-05	0.0011	19.8	1.1	1	23	652	674	652	674	0.93
11	11	1.7e-06	0.00015	22.5	0.9	1	23	680	703	680	703	0.96

Sequence Information

Coding Sequence: atgTCAAACTGCTGCGTGAAGGGTTGCAAAACTCGTAAACGAGCTGGCGATACTGTATCTTTTCACAGGTTTCCAAACAGCGAGCCATACTACAGTTTGTGGCTGCGAGCATGTGGGAGAGGGGACTGGCGGCCACCCTCTGTACATTCTAGAATATGTTCCATCCACTTCGAGGAGCATTTGCTCATAAGATCAGAGAGTGTAACCTTCCTTGTCCCAGGGGCTGTGCCTTCGAAATTTAttcatGAAAGTCTAGATGTAAGTGAAGGGAAGATAGAAGGAAGTGGACTTTCCGAGGAGACAGCAAATCCAGTTACAATAtgtaatgaatttatttatgTGTGCAGAATTTGCTTAAAGACAGACAGAAGTATGTCTGCGTTAGAGAACAATcttctatatatttatcaaaacattACGAACATACAGATAACTTCCGGGGAGCTAGCTAAAATGCTTTGTTGGGAGTGTAAACATCGCCTTATAACATGCAATCAGTTCACAAAGCTAGCTAAAAACTCCAATCGCCTAATAACAGAGTTACTGAACAGTGAATCTAATGTCTCGTTAGAGAAAATTAAATCTCTAGCCGAAGCAGACAATCATATATCAAATCTAGTCCAAAAGATATATCCACCAGATCACAGGGACTTcaatattacacaaaataatgaAACCGACatcatagaaaaaaatacacaaatgtcCCCGGAACATGTAGACCttgtaaataatagtaaaagtgGAATAATCCTTGGCGATACATTCGATAATGAGGAACTGGAGAAGTTTCAAGATGGAGTATCAGGTAAATCAGACATTTCAGATTCAGAAGCAACAAAATACGTCTTTGCTGAGAGATTGAATGCAAATAAAGCAGAGATGATTTACAAGAGAGTGAGAAGGAAAAAGCACAAAACCCCTGAAGAATTGGATCCAGATGTTTTTGTGACGACGAATCTGACACAAGAAGAGCAGTTGAAAGAAGTGGAACTGAGAAAAGAGAGGGACAACTATAAGTTTTCTCCGTACAAATGTGAGGAGTGCTACAAAGGTTTTCTGAATGAGGGTATATATAAAAGTCACATGGCAAGACATTCTGATCAATCCGGCACATATATTTGTGAGGTCTGCAAAGTCCACTACCACAGTATGCGATCTCTCCGTCACCATGTCACTTCTCACATGCAGAGGTTCAACTGCAAGAGATGTCCATTTGTCACGACCAGACGGCACGCGGCAAAGTTGCACAATGAATACCATAACGGTACAAGATACAGCTGTCCTAAGTGCGAAGAGGATTTTGGTAAGCTGTCGACGTACCTCAGCCACTTGAGGATCAAGCACCCCTCGGATATCGTGTGCCCGCTCTGCGGCTGCTCCTTCGTCAGCGGCAAGGGCCTGCTGCTGCACCAGAAGCTGAAGCACCGCTTCGAACAGCACACGATTACCAACAACAGTCCTTTATGCGTCGAGTGTAAAATACATTTCGCTTCAGAGGAGGCCTTGCTTAAGCACTACAAGGTGTCCGCCAGACATAAAGACAGacagacatcgCTGCGAAAAGGAAGACCGATTAAGAAGTTTAACTCCGAAAATGAACAAAACAAGTCCCTAAAGAAGATGGAAAAAGCAAGGTCTGACAAACTGAACCTCAAAGTGAAAGGTCCCATACCTTGTGAACAGtgCGACAAGCAGCTGCCAAATTCGTTGTCGTACTACTGGCACTTCAGAAACTCGCATCCGGACAAGAATCGTACCAAATACCCTTCGATGCCGTACAGATGTATGTGTGAGGTCTGCGGGAAGATGTTTCAAAGCCTCGCATTGCTGCACGACCACAGCAGCAGCCATACCAACGTGAAGCAGTTCAAGTGCGCGCTGTGCGACAAGGCGTTCTCGCGCCGCTATCGGCTGGTGGCGCACGCGCGCGTGCACGCCGAGCGCGCGCGGCACGCCTGCCCCGCGTGCGGCAAGATGTTCAGCACGCGCAGCAACATGCGCCGGCACAGTGCGAGCCACAGCGGTGCGCGGCCGTATAAATGCGAGATGTGCGGCAAAGCCTTCAAACACGTCAGTCTACTGAGAGTGCATATCAGCTACGTGCACATGAAGAAACCATGGCCCAAGAGGTCGAGGGGAAAGACCGGCGAGCGACAGagTACGAACTCCCAAGTGCCGGCTGTCGATAGGACGGACGCGGAGGTGGCGCAACCGATTTGGGAGGGTTGA
Protein Sequence: MSNCCVKGCKTRKRAGDTVSFHRFPNSEPYYSLWLRACGRGDWRPPSVHSRICSIHFEEHLLIRSESVTFLVPGAVPSKFIHESLDVSEGKIEGSGLSEETANPVTICNEFIYVCRICLKTDRSMSALENNLLYIYQNITNIQITSGELAKMLCWECKHRLITCNQFTKLAKNSNRLITELLNSESNVSLEKIKSLAEADNHISNLVQKIYPPDHRDFNITQNNETDIIEKNTQMSPEHVDLVNNSKSGIILGDTFDNEELEKFQDGVSGKSDISDSEATKYVFAERLNANKAEMIYKRVRRKKHKTPEELDPDVFVTTNLTQEEQLKEVELRKERDNYKFSPYKCEECYKGFLNEGIYKSHMARHSDQSGTYICEVCKVHYHSMRSLRHHVTSHMQRFNCKRCPFVTTRRHAAKLHNEYHNGTRYSCPKCEEDFGKLSTYLSHLRIKHPSDIVCPLCGCSFVSGKGLLLHQKLKHRFEQHTITNNSPLCVECKIHFASEEALLKHYKVSARHKDRQTSLRKGRPIKKFNSENEQNKSLKKMEKARSDKLNLKVKGPIPCEQCDKQLPNSLSYYWHFRNSHPDKNRTKYPSMPYRCMCEVCGKMFQSLALLHDHSSSHTNVKQFKCALCDKAFSRRYRLVAHARVHAERARHACPACGKMFSTRSNMRRHSASHSGARPYKCEMCGKAFKHVSLLRVHISYVHMKKPWPKRSRGKTGERQSTNSQVPAVDRTDAEVAQPIWEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01143384;
90% Identity: iTF_01141734;
80% Identity: iTF_01141734;