Basic Information

Insect: Papilio elwesi
Gene Symbol: topi
Assembly: GCA_029641285.1
Location: CM056364.1:819485-824336[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.011 0.99 10.4 1.1 1 23 216 239 216 239 0.97

2 9 0.0007 0.062 14.2 2.3 2 23 247 268 246 268 0.97

3 9 0.12 10 7.2 0.1 2 23 304 326 303 326 0.95

4 9 0.02 1.8 9.7 2.0 2 23 329 351 328 351 0.94

5 9 1.3e-06 0.00012 22.8 0.5 1 23 357 379 357 379 0.96

6 9 0.00028 0.025 15.5 2.2 1 21 418 438 418 441 0.90

7 9 0.0038 0.34 11.9 1.8 1 23 447 470 447 470 0.96

8 9 2.9e-06 0.00026 21.7 2.4 1 23 478 500 478 500 0.96

9 9 0.00071 0.063 14.2 0.2 1 23 506 529 506 529 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.011	0.99	10.4	1.1	1	23	216	239	216	239	0.97
2	9	0.0007	0.062	14.2	2.3	2	23	247	268	246	268	0.97
3	9	0.12	10	7.2	0.1	2	23	304	326	303	326	0.95
4	9	0.02	1.8	9.7	2.0	2	23	329	351	328	351	0.94
5	9	1.3e-06	0.00012	22.8	0.5	1	23	357	379	357	379	0.96
6	9	0.00028	0.025	15.5	2.2	1	21	418	438	418	441	0.90
7	9	0.0038	0.34	11.9	1.8	1	23	447	470	447	470	0.96
8	9	2.9e-06	0.00026	21.7	2.4	1	23	478	500	478	500	0.96
9	9	0.00071	0.063	14.2	0.2	1	23	506	529	506	529	0.96

Sequence Information

Coding Sequence: ATGGAAGAAGAGGAATCAACGGATATGTGCCAAACTTGTCTCGTTCGTGGTCGTTTTCTGTATCCATTGCGTAAATTGACATCGACATTGAATGATGTGGGAATTCCTATACGGaaaGATGTGACCACTGGTGTATGTTGGGAGTGCAAGACCTTCATAATGaagattaagaaatttaaattacaagtgATCAGGGCACAGGACGCTCTGATGGAAATAGCATCGGTACCTAACCAAGATTTTCAATCTTTGAGCAGATTATCCTACTACACTAAATATCATTATGACttagaaatattatatacagatCCACTAAATAACTTTGAACTTGAAAACAATGAAGTTAAAAAGGAAGAAAACCTTTCTGATATAGAAATAGATCAGATACCTGACAATATTGataatacagaaaaaataatatataataaagataaaagctATGTACAAGATGCCACAAACTTTAAGGGCAATACACACAGTTGTAATGCAAAATTGATACACCGTGCTAAGAAAAAGAATATTCTAGATTCAAATACCTCAGAGAATTATGTTGAAGATAAGTATACAACTGTGGTGTTCACAGAAGAAGAAATGTTGaagaaaagagaagagaaaagaAACCAGCCCAACTTTAAGAAGATTCCGTATAAATGCGAATCTTGTGTACTAGGGTTTACACGCAGAGATAAGTACGATCAGCATATCGAGAAGAGACATGATATGaaacTAGGCACCAGCGTCTGCAATGTTTGTCAATCTCGGTTCAGCACTACCATGTCTTTGAAGAGGCATCGTATGAAGCATTATGTGGTCTACCGTTGTCGTCTCTGTGACTATGAGACGTTGGAATGTTGGTCGGTGGTCAGCCATTGCCGTCTGAAGCACAACAGAGATACAGATGGAAGAATACATTGTCCACAATGCTCCGTCATTGTACAgAACCCAAAGGCATTGTCTGAACACATAAATAGTGAACACTTGCTCCAATGTGCTCAATGTGGAGATAAATTTAAAGGGAAACATACGCTACGGAcacataaaatTCGTATCCATGGAGCAAAGCGTAACTTCATATGTGATATGTGCGGCAAGTCGTTCAACACCAAGTCTCGCCTCGAGTCGCATATAGTATCGCATAACGCTGAGCTCGCAACCAAGTTGGCGTACTGCGCGCCATGCAACGTCCAGTACAAGAATATATACGTGTATAGAAACCATCTCAAGAACAGTGCAAATCACTCGGAGAGAGCGTACGAGTGTAAGGAATGTAAGAAGAAATTCGCTTCCAAAGTGTACTGGCGGAAACATTGGGACTTTTACCACCTTCACAAGTCGCAGCATAAATGTGAGATATGCAATAAGCTGTTCATATCTGACTGGCGATTGAAGAACCACAGACAGATTCAACATGGACTTACAAGATCTAGGAATCACGCGTGCAATATTTGTGGAAAGAAATTCTTTACTCAATCAACACTACGTGGTCACCAGCTGACCCACTCCGAGGAGCGTAGCTACATGTGCGAGGACTGCGGGGACACGTTCAAGCAGCGCCCGGCGCTCTACACGCACTCGCGTCTCGTGCACAAGTCTAGCCGAGTGACCACAGTGACCGTTTCGACCACAAACTGA
Protein Sequence: MEEEESTDMCQTCLVRGRFLYPLRKLTSTLNDVGIPIRKDVTTGVCWECKTFIMKIKKFKLQVIRAQDALMEIASVPNQDFQSLSRLSYYTKYHYDLEILYTDPLNNFELENNEVKKEENLSDIEIDQIPDNIDNTEKIIYNKDKSYVQDATNFKGNTHSCNAKLIHRAKKKNILDSNTSENYVEDKYTTVVFTEEEMLKKREEKRNQPNFKKIPYKCESCVLGFTRRDKYDQHIEKRHDMKLGTSVCNVCQSRFSTTMSLKRHRMKHYVVYRCRLCDYETLECWSVVSHCRLKHNRDTDGRIHCPQCSVIVQNPKALSEHINSEHLLQCAQCGDKFKGKHTLRTHKIRIHGAKRNFICDMCGKSFNTKSRLESHIVSHNAELATKLAYCAPCNVQYKNIYVYRNHLKNSANHSERAYECKECKKKFASKVYWRKHWDFYHLHKSQHKCEICNKLFISDWRLKNHRQIQHGLTRSRNHACNICGKKFFTQSTLRGHQLTHSEERSYMCEDCGDTFKQRPALYTHSRLVHKSSRVTTVTVSTTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01143349;
90% Identity: iTF_01143349;
80% Identity: -