Basic Information

Insect: Papilio elwesi
Gene Symbol: Zfa
Assembly: GCA_029641285.1
Location: CM056358.1:5892040-5901441[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0036 0.31 12.0 3.4 1 23 268 290 268 290 0.97

2 11 0.13 11 7.1 1.3 1 23 297 319 297 319 0.97

3 11 2.4 2.1e+02 3.1 0.1 1 12 323 334 323 344 0.81

4 11 6.1e-05 0.0054 17.6 1.4 1 23 351 374 351 374 0.91

5 11 0.021 1.9 9.6 3.1 2 23 381 403 380 403 0.96

6 11 7.9e-06 0.00069 20.4 2.4 2 23 417 438 416 438 0.95

7 11 0.081 7.1 7.8 2.8 1 21 444 464 444 469 0.92

8 11 4.9e-05 0.0043 17.9 1.4 3 23 479 500 477 500 0.96

9 11 0.00037 0.033 15.1 2.5 1 23 506 529 506 529 0.96

10 11 7.4e-05 0.0065 17.3 0.3 1 23 538 560 538 560 0.99

11 11 5.7e-05 0.0051 17.7 0.6 1 23 566 589 566 589 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0036	0.31	12.0	3.4	1	23	268	290	268	290	0.97
2	11	0.13	11	7.1	1.3	1	23	297	319	297	319	0.97
3	11	2.4	2.1e+02	3.1	0.1	1	12	323	334	323	344	0.81
4	11	6.1e-05	0.0054	17.6	1.4	1	23	351	374	351	374	0.91
5	11	0.021	1.9	9.6	3.1	2	23	381	403	380	403	0.96
6	11	7.9e-06	0.00069	20.4	2.4	2	23	417	438	416	438	0.95
7	11	0.081	7.1	7.8	2.8	1	21	444	464	444	469	0.92
8	11	4.9e-05	0.0043	17.9	1.4	3	23	479	500	477	500	0.96
9	11	0.00037	0.033	15.1	2.5	1	23	506	529	506	529	0.96
10	11	7.4e-05	0.0065	17.3	0.3	1	23	538	560	538	560	0.99
11	11	5.7e-05	0.0051	17.7	0.6	1	23	566	589	566	589	0.96

Sequence Information

Coding Sequence: ATGGATTTAATTAAGGAAGAAAATGAAATGACAACATTTGCATGTTGCGTAAACtgtttaaaaaagaacaatgaAAGAAATACACCACACTATGAACTACAGAGTGATCCATTGAAAACCATCTTTAAGGTTGATGCACTTTCTCTGTGTTACATTTGCACGAAAATGGTTCAAAATGCAGAATGCCTTATAGATACAATTCTAAGTAATCAAATTTTACTAAATTTACACaatttTTCAGATGAAACAAAAGAGGATATAAGACAGCCAATATGTAGTTTCAGTTTAACAGTATTAGATCCTATTGAACTATCTGGTATCGACGAACAGACTGCAGTACCaactattatatatacacatgGTGTTTACAAAGAATGCATGATAAAGGATGAATTGAAATGTGAAATTGAAGACTATTTGGATAATGATTTTATAGACATACAAATAGATGTTAAAGATGAAGTAAATCTGTTAGAACTTAATACAGAATATGAAACAAATCTTCATGAAATGGATATAACGAAGAAGAatgttaaaaaaaggaaattcaACGATACAATAGatactAATGGACAGTTTCAAGAAACAGATTGTCGAATAGAAAGTGATGTGAAGTATTTAATAGAGGCTACGGCTAACGATTTTCTGTGCGAGATGAAAGCGAAAAAACCGCAGAAAACAACTAGATCGGAAAAGGATACATTTGAAAATAGTagcatagaaaaaatatatataacaagagAACAATGTATGGAGGAGCGACATAGTAAAGCCCAAGAGAAGATATACGTCGATGCCCCATACAAATGTAAGGACTGCATCAAAGGTTTCACATACAAGGCCAGTTATCATAAACATTTGGAATTGCACAGTAAgGAGAAAGGTGATTACGAATGCGACATATGTAAGCAAAGAATGGATACAGAAGATAAAATGCTGCGGCACAAAAAATATCACGAAGTACGTTTTAAATGCTTAATATGCGGACTAGTACGCAGCACAAATATAAGCGACCATTACAACTCCGCACATTCCAAGATGGCCGAGATATATGCGTGCAAGGACTGTTCAAAGACATTCACGAGTCGGTTGACTCTGAGGAAGCATGCCACTTACGCGCACAGAACTGACAAGAGGGTGACGTGCGCGCATTGTATGAAGACATACGCTAATAAAGATGTCCTTAgaacacacatacacacacGACATCCAAATGTACTGCCCGTTAGCGTAGTGAAGAAGTCTTGTGTGTGCGATGAGTGCGGCAAAACGTTCAGAGCTCCGTCACACCTCAAGGCGCACAGCCTCAAGCACTCGTCGGAGAAGAGATTCTTCTGCGTTGAATGTAATAAaAGTTTTAAATGTGAAAATGGATTAAAGCAACACTTGAAGTTGACGGCGCGACATGTCAACCCTAACGAATTGCGACTAGCGTGTTCGCATTGTGACAAGAAGTTCGGCATCAGACGCGACTTGGAGCGCCACATGAACCGAATACATCTCAATGTTAGACCGTTTAAATGCGACCGGTGCGAGAggGCTTTCGTGAACAGTTGGTGTCTGAACAAACACAAAAAGCTAGCCCATGAAGGATACAAGCGGCCATTGGTGTATCCTTGCCCGATGTGCGACAGATTGTTTGACCGTAACACCATACTCAAATCGCATATCCGGACGCACACTGGCGAGCGCCCGTACCAGTGTACTAGATGTCCGGCAACGTTCTCACAGTCCAGCAGCCTCGGAACGCACACGAAACTCGTCCATCTCAAACAAACGAGAGATGGAAAACCAAAAATTAGctcgaaataa
Protein Sequence: MDLIKEENEMTTFACCVNCLKKNNERNTPHYELQSDPLKTIFKVDALSLCYICTKMVQNAECLIDTILSNQILLNLHNFSDETKEDIRQPICSFSLTVLDPIELSGIDEQTAVPTIIYTHGVYKECMIKDELKCEIEDYLDNDFIDIQIDVKDEVNLLELNTEYETNLHEMDITKKNVKKRKFNDTIDTNGQFQETDCRIESDVKYLIEATANDFLCEMKAKKPQKTTRSEKDTFENSSIEKIYITREQCMEERHSKAQEKIYVDAPYKCKDCIKGFTYKASYHKHLELHSKEKGDYECDICKQRMDTEDKMLRHKKYHEVRFKCLICGLVRSTNISDHYNSAHSKMAEIYACKDCSKTFTSRLTLRKHATYAHRTDKRVTCAHCMKTYANKDVLRTHIHTRHPNVLPVSVVKKSCVCDECGKTFRAPSHLKAHSLKHSSEKRFFCVECNKSFKCENGLKQHLKLTARHVNPNELRLACSHCDKKFGIRRDLERHMNRIHLNVRPFKCDRCERAFVNSWCLNKHKKLAHEGYKRPLVYPCPMCDRLFDRNTILKSHIRTHTGERPYQCTRCPATFSQSSSLGTHTKLVHLKQTRDGKPKISSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -