Pelw017836.1
Basic Information
- Insect
- Papilio elwesi
- Gene Symbol
- -
- Assembly
- GCA_029641285.1
- Location
- CM056362.1:451671-455876[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.6e-05 0.0023 18.8 0.2 1 23 376 398 376 398 0.97 2 12 0.84 74 4.6 0.2 5 14 455 464 453 468 0.86 3 12 0.00032 0.028 15.3 0.7 3 23 485 506 483 506 0.95 4 12 0.00025 0.022 15.6 1.5 1 23 511 533 511 533 0.98 5 12 0.0043 0.38 11.8 0.4 2 23 555 577 554 577 0.94 6 12 0.0063 0.55 11.2 1.0 1 23 581 604 581 604 0.97 7 12 0.64 56 4.9 0.3 2 23 627 649 626 649 0.90 8 12 2.5e-05 0.0022 18.8 2.4 1 23 659 681 659 682 0.96 9 12 0.063 5.5 8.1 1.8 5 23 701 719 699 719 0.94 10 12 0.014 1.3 10.1 0.8 1 23 725 747 725 747 0.94 11 12 0.29 26 6.0 2.7 1 22 753 774 753 777 0.90 12 12 1.9e-05 0.0017 19.2 1.3 1 23 836 858 836 858 0.98
Sequence Information
- Coding Sequence
- ATGAGTAAATCCAGAGCAGAATATATGCGAGATTACCGGAAGAAAAAACGTGAGGAAATACTAAAAACTGGAAAAGTACagctaaaaaaaattgcacataGTTCAACTCAGCGTAGTAGGGATTTTCGGGCCCGTGCAGCCTATTTAATTCGCTTACAGATATCAAATGTCGACAATTACGTTGTTCATTATCAAGTTAAAGATATGTCGTTTCTAAATAATTCAGCTGCCAGCAATGATACACaagagaatttaaataaaacagttattaaaCAAGAACATAATTTGGAAGTAAATGaagatatctatataaaatctgAAGTAGATTACAATGAGGATCATACAACCGTTGTAAGTCCAATTGAAGGTACACAATTGCAAATTAAACAAGAATTTGTGCTGCCAAACATTGAAAAGCAAACAATTTATCAAACCAGTGAAAATTATGAGGTACCTATTGAAAAAGAAGATGGCAATAATGATATGCCaagaaattcatttttaacacaaatggaaaaatataaacacaaagTGAGAGAAGAAACAATAACCAACATATATGATGAtaacatagaaataaaactGGAAAATGAAATGATAGAGGAAGATGATGCGTACGGATGTGCTGATGTGGACGATGGCCACAGTATGGACAGTAATGAAGCAAAAGCATTACATAATGTTGAAGCCTGTCTCCAAGATAATATTAAGATCAAGTCAGAAAGTGATATGTTTGAGGAAAATACGAATCACGACGTGGAAAAAGTGACAATTAAGAATGAAATTGAGTTAACAGTCACAGAAACTCATTTgatatctaataaattaattaatacaacatCTACCATAACCAATCCACAGGATGGAATAATTAAGtcacaaacaacaaaaacattggTAATGGAAATATTGCCTATGGATATATACCCAGGCACTATCCCACTAGGTAAAATTAGTAATCCAGAAGAAATACTGCCGACGTCTTATACGAACAATGAATTCAATGCAATGGATTATGACGATGCTTTTCAATTGAATTCAATAACCGGTGATGTGATGTCATTAGAGCAAGAAGCTTATGGCCTTCTAGAagctaaaaagaaaaaagaaaaattagacAGACCATATGTTTGTTCTAAATGTCCAAAAGCTTACAGTACCCCTTATCCTTTGAAAAAACACGAAAGTGTTCACAGGACGATTGAAAACCGCGCATTGGGAATCACCAAGGGACTGAAGACAAAAAAGgctaataaaaagaaaaagataaaagagGAGAAAATGTTTGCGCAACAGATGACAGAACAAGTCAATGTGGAAACTGTTAAAGCCGATAATGTCAAGAAGGAAGGCTACGAATGCACTTGTGGGAAAGTTTTCCGACGTAGGAGTCGAATGGAGACCTGTTTACGTTCCCACAATATGCGTTCAGATATCAATTCTTATCTCGCATGCGTCACTTGCAACAAACAGTTCAAAGACAAAGAAGAATTGGCATTGCACCGAAAAAGAACGCACAGAAAGTTACGGTTTCCTTGTAAGTTTTGTCCTACAGACTACAAAAGTCGGAAAGAACTATTTAAGCATTTGCAAATACACCAGAAAGTTCAAGTGATGGAATACAAAGTGTTGTCGGAAATTGTTAAAGGAAAGGAACAATTGAGATGTTTCATGTGCGCGAAAACCTATACAGAACTATCAGAATTAAAGTCTCATGTGATGAACGATCACAAGGAACCGTATGTTTGCCCACATTGTAATGGTACCTTCTCGAAAATTATAGACTTTGGTAATCATACGAAAACTGATCATCCAGAAGTAGAAGGGCAGTCAGTATTGGATGTTTTAGAGGCCTTTTCTAAATTAGTGAAGGCCTGGAAATGCGAAGAATGCGAAGTTCAATTTCACGAGGCAGACAAACTAGCGTTACATAAGATAGAAAAACACAGCCCCGATTTAAAAGCGCAACCCCAGTTCCAGTGTCTAGACTGTCGGCGGGTGTTCGTCAGTCAGAAAGGTTTAACATCTCATAGACGCATCCACCACAGCGCAGAGAGCATGGATGATTCTGAAATGCTACAAAAAGGCATCTTGTGCATAGAATGTAGAAAGATTTGTAGAGATACTAACGCGTTGACGTCTCACATGCGTCTACATTCATCAGAACGGAAGTATCCGTGTAAATTTTGCGATTTTAGATTTGCAACACCCGAAAAGAGAAAAACTCACGCGGAATTGCACACGGGAGATATGAAATACGTTTGTTTCATTTGCGAATACCAATGCAGTTCGGAGAATCGATTGAAACAGCATAAGATGTCTGCCAAACATCTCAGCATGAAAGATTTCTTGGCGACTGGCAAACCTTTAGCGGTTCAGGAGCAATCGACCTCTGAAATGGCTGAAAAGAATGAGGGTCCAGAAAAAGAAGAATGGGTTGTGGTAAAAGAAGAGAACGCAGAAGAAGACAGCGAGGATGATAGTTCATCTCACACTGGCGGCGAATTTACTTGCGATATTTGCGGTCAAACTTTCAACACGGTATCCAAAATGTTAAAGCACCAAACAACTCATCCGTTTATTGAAATACCAAACGAGGATAAACCAActaggatattttttaaatag
- Protein Sequence
- MSKSRAEYMRDYRKKKREEILKTGKVQLKKIAHSSTQRSRDFRARAAYLIRLQISNVDNYVVHYQVKDMSFLNNSAASNDTQENLNKTVIKQEHNLEVNEDIYIKSEVDYNEDHTTVVSPIEGTQLQIKQEFVLPNIEKQTIYQTSENYEVPIEKEDGNNDMPRNSFLTQMEKYKHKVREETITNIYDDNIEIKLENEMIEEDDAYGCADVDDGHSMDSNEAKALHNVEACLQDNIKIKSESDMFEENTNHDVEKVTIKNEIELTVTETHLISNKLINTTSTITNPQDGIIKSQTTKTLVMEILPMDIYPGTIPLGKISNPEEILPTSYTNNEFNAMDYDDAFQLNSITGDVMSLEQEAYGLLEAKKKKEKLDRPYVCSKCPKAYSTPYPLKKHESVHRTIENRALGITKGLKTKKANKKKKIKEEKMFAQQMTEQVNVETVKADNVKKEGYECTCGKVFRRRSRMETCLRSHNMRSDINSYLACVTCNKQFKDKEELALHRKRTHRKLRFPCKFCPTDYKSRKELFKHLQIHQKVQVMEYKVLSEIVKGKEQLRCFMCAKTYTELSELKSHVMNDHKEPYVCPHCNGTFSKIIDFGNHTKTDHPEVEGQSVLDVLEAFSKLVKAWKCEECEVQFHEADKLALHKIEKHSPDLKAQPQFQCLDCRRVFVSQKGLTSHRRIHHSAESMDDSEMLQKGILCIECRKICRDTNALTSHMRLHSSERKYPCKFCDFRFATPEKRKTHAELHTGDMKYVCFICEYQCSSENRLKQHKMSAKHLSMKDFLATGKPLAVQEQSTSEMAEKNEGPEKEEWVVVKEENAEEDSEDDSSSHTGGEFTCDICGQTFNTVSKMLKHQTTHPFIEIPNEDKPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01143352;
- 90% Identity
- iTF_01143352;
- 80% Identity
- -