Pelw018702.1
Basic Information
- Insect
- Papilio elwesi
- Gene Symbol
- -
- Assembly
- GCA_029641285.1
- Location
- CM056364.1:3813617-3821465[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.3 3.8e+02 2.3 1.6 1 23 265 288 265 288 0.87 2 11 0.0055 0.49 11.4 0.1 2 23 297 318 296 318 0.95 3 11 0.00028 0.025 15.5 1.3 3 23 352 373 350 373 0.91 4 11 0.0077 0.68 11.0 1.2 2 21 378 397 378 398 0.92 5 11 9.3e-05 0.0082 17.0 0.3 2 23 411 432 410 432 0.94 6 11 1.5e-06 0.00014 22.6 0.7 1 23 437 459 437 459 0.98 7 11 4.6e-05 0.004 18.0 5.1 1 21 468 488 468 493 0.94 8 11 0.00044 0.039 14.9 2.1 1 23 501 524 501 524 0.92 9 11 0.0018 0.16 13.0 0.3 1 23 530 553 530 553 0.96 10 11 0.003 0.26 12.3 0.4 3 19 567 583 565 584 0.91 11 11 0.0049 0.43 11.6 1.2 1 23 597 620 597 620 0.98
Sequence Information
- Coding Sequence
- AtgaaggaaataaatattaacatcgAAGGATATAATGTAAACGGGATTTGCGTTGGGTGCCTGAATTATAATCGCAAGATGTTTTACCGCGAAGatgttaaagaatattttaaaatatgggCTAATATAGATGTTCCAGATGGCTTGACGATCCAGGTGTGCTGGGAGTGCCTTGCTGCAGTAGAGTCTGCAGTTCGATTCAGAAATCAGATTCTTCAAGCATACAATGTGCTAATGGAGTATTCAAACAAGCACATGTTCCTGAACTCTCCGAATGATCTATCAAATCGTGCGATGAACCGTCTCTCTGTTTCGCCCATAGTGTGTGACGCATCAGTGCTAATACATCATGTGAAAGAAGAAGAGGAGATCAATTTAGACATGGATGTGATTAAAATAGAAGATGACTTGGAGAAAAGTGATGCTGAGAAATCAGCTTTTCCCGAACCTGATCCACAACAATTGGAACCATCACTAAGTCCAAAGAAAGAGGATATAACAGATGATTACTTTGATGTCACCGACTTTCAAGAAGATCAGGACTCTTCCGATGATGACATACAATTGTCTAAGCTAAAGactaagaagaaaaaaagaaggAAGGATAAAGAGGAGAGGAATAAAAAGAGGGAAAAAGATATGGAGAAGAAAGAAGTAGAAGAGCCAGTAAAAAATTCTAGAAAGTTAAAGAACTTGCCGGAAGACTTTGTAGAGCTGTATACTATGACAGAAGAGGAGATGTGGCAAGTGAGAGCCAAGGACGTGGCCAGACAAGAGTTTATGGCGTTGAAACATAAATGTGATGACTGTATCAGAGGGTTCAATACTGAGAAGCTCATGAGTTTCCATATGAACGGGAAACATGTGccgAAAGGCGACGACGACGTGCAATGCGACGTGTGTAAGGCTTACTTTGTGACGCGCGACAACATGGCGGCTCATCGAGCGCTTCACTATTCGGCGTATAGATGTCGCGCTTGCGGGGAGACGATGACGCTGAAACGCGCTATCGTGAAACACGCGTGCGCGGAGCACGGAGCGCCCGGGCTGGCGTGCGGCAACTGCGGGAAGACGTTCTCCACAGAATCGAAGCTGAGTTATCACAGAGGGGTGTGCCACAAAGAGAGTCCTCAATGCGACTGTTGTGGGAAAGTGTTCGCTAGCAAAATGACCCTTAAATATCATTTGAAATTACTACGGCCGAATAAGCCAGAAGAAAAAGTTCACTTGCCGTGCAAGGGATGTGACAAAGTTTTCTTCTCCAAGAAGAGTTACAGAGCTCACGTTGTGATCCACAACGGTGAAACGTACCCGTGCCCGATATGCGGCAAGCAGTTCCAATGGAAGCGGAACCTCACGCGGCACATGAGGAACCACCGCGAGCGCGACGCGGGCGCGCTGCACGAGTGTAGAGACTGCGGCAAGACCTTCTCCAGCCGAGACTGTTATAACAACCACATGAGGCTCAGCAAGCGGCACGTGCCGGAAGAAGCGTACATTCACACGTGCAACTATTGCGGGAAGAAGTTCGCCAGCAAGTGGTGTATGGTGGACCACATCGACTGGGACCATCTCAAGGTCATAAAGTACCAGTGCAGTGTGTGCTTTAAGGCGTTCAAAACTGCAAAAATAATGGTGGCCCACATGAACAATATACACGAAGGTAAAAAACATAGAGAACCAGAGTCGGAACATTTGTGCGAAATATGCGGCAAATCATACAAGACTGCCAAGCGACTAAAAGGCCATGTATGGGCGATGCATACAAACCGCTCTTCCAGCAAAACCTTCAAGTGCAAGCTCTGTCCTGCTACATTCACGTGGCAGACCTCAATATACAAACATATGAAGATGATGCATGACACCAGCAAGCGGAGCAAGCAATCCCGGTCAATTAGTACAGTGAAGAAGCAGGAGCCCTATGCGGAGATAGAAATAACAAACAGAATGCAGTACTTCCAACAGAATCTGGCTAACAATTTACAGAACATGGTGCAGGTTCAACCGACTCCAATACATATTGTACAGAATATTGTATGA
- Protein Sequence
- MKEININIEGYNVNGICVGCLNYNRKMFYREDVKEYFKIWANIDVPDGLTIQVCWECLAAVESAVRFRNQILQAYNVLMEYSNKHMFLNSPNDLSNRAMNRLSVSPIVCDASVLIHHVKEEEEINLDMDVIKIEDDLEKSDAEKSAFPEPDPQQLEPSLSPKKEDITDDYFDVTDFQEDQDSSDDDIQLSKLKTKKKKRRKDKEERNKKREKDMEKKEVEEPVKNSRKLKNLPEDFVELYTMTEEEMWQVRAKDVARQEFMALKHKCDDCIRGFNTEKLMSFHMNGKHVPKGDDDVQCDVCKAYFVTRDNMAAHRALHYSAYRCRACGETMTLKRAIVKHACAEHGAPGLACGNCGKTFSTESKLSYHRGVCHKESPQCDCCGKVFASKMTLKYHLKLLRPNKPEEKVHLPCKGCDKVFFSKKSYRAHVVIHNGETYPCPICGKQFQWKRNLTRHMRNHRERDAGALHECRDCGKTFSSRDCYNNHMRLSKRHVPEEAYIHTCNYCGKKFASKWCMVDHIDWDHLKVIKYQCSVCFKAFKTAKIMVAHMNNIHEGKKHREPESEHLCEICGKSYKTAKRLKGHVWAMHTNRSSSKTFKCKLCPATFTWQTSIYKHMKMMHDTSKRSKQSRSISTVKKQEPYAEIEITNRMQYFQQNLANNLQNMVQVQPTPIHIVQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01143321;
- 90% Identity
- iTF_01143321;
- 80% Identity
- -