Pelw018607.1
Basic Information
- Insect
- Papilio elwesi
- Gene Symbol
- -
- Assembly
- GCA_029641285.1
- Location
- CM056364.1:2657716-2662680[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00033 0.029 15.3 1.0 2 23 235 257 235 257 0.96 2 10 0.042 3.7 8.6 2.9 1 23 291 314 291 314 0.95 3 10 0.019 1.7 9.7 1.9 1 23 318 341 318 341 0.94 4 10 2.7e-06 0.00024 21.8 2.2 3 23 346 367 344 367 0.96 5 10 0.00013 0.011 16.6 0.7 2 23 371 393 371 393 0.96 6 10 0.0028 0.25 12.3 0.7 3 22 408 427 407 431 0.92 7 10 8.3e-06 0.00073 20.3 0.4 2 23 440 462 439 462 0.94 8 10 4.5e-05 0.004 18.0 1.0 1 23 468 491 468 491 0.96 9 10 0.0016 0.14 13.1 0.2 3 23 502 522 501 522 0.98 10 10 0.02 1.8 9.6 0.3 1 23 528 551 528 551 0.97
Sequence Information
- Coding Sequence
- ATGGATAGTATTAAgatagaattaataaattatgatagGATCTGCCGTGGTTGTTTAAGCTTGGAGCGAAATGTCGCTCCTCTAGGGGAATTctctgatttattttataagatttcaGAACCCCAGGGATTTATGTAcgataatgtattattatgttgGGAATGTAAAGGTGTCTTACGTAAAACATGGAGATTCCAGCAAAGGATACATCAAGCTCAGTTCTTCTTCCAGCAACCTGAATTCTTCCAGCAGCAACTTaataatttaaaaacatatagcTTATCAACATTACAGTCAGTAGCCATTGACAATAATTATGAAACTATACAAGAAGATTACAAAGAGAAGGAGCAAAAAGTGAAATTAGAAATAGAACAAGACATTGACAAAATCAATTCAGACTTAGATGATAATATACATGAAGTATATGGTggtgaagaaattaaaattgaacttAAAGAAGAGGTTCGTGATGGTAAAGAGAcaaaagaagaagagaaaaagaagaaaccattaattgaaaaagaaattaatgttcaaaaagaaaaatggcaatccaaatatataaaatgcgcTATAGTTACTGAAAACAATTTGAATAATGGAGAAAacttgtacataaaaaaatatttaaatgacaagGTCTTAGAAGAGTTATTGGAGAGAGGAATgatgagatttaaaaaaaattcatgtaAGAATGTATGCAAAATGTGTCAAATGGCCTTCCAGAAGAAAATTGATCTTAAAAGACATATGATTTCTAAACATTTGCCGGGAAATGGCCCATACAAGTGCAGCGAATGCCGTTATACTGGCAAACTAACCACCATGAGTGAGCTACGAGCACATTTTGGGAGTCATGCAGTGTACAAATGTAAGCTATGTCTGGAAGTGTGCAGATCTCTGTCAGAAATCAAGAGTCATCTACTGCATGTTCACCGTCATAACTACCAATGTATGAAGTGTGAGAAAAGCTTTGACGCCTTCAGAGAATTCTTTTGGCACTATAAGGACTTGCACGATCGGATGATATGTGACCATTGCGGAAGGACATTTATAAAGAAGAAAACATTAGAGGCACACATGAAACGTCAACACCTGCCACCAGTTTGCTGTGTTTGTGGTCGACTCTTCAAGAACGCGGATGCTTTAGAATCGCACACGCGTCGCGTTCATCCGGAGCTACACTACGACGTCAGCAACAAGGAGCTGTCCTTCTGCGTGGAGTGCAACAAGCAATTCAGCAGCGTATACAAGTACAGACGGCATCTCAGCACCGCGTATATACATAGGCCACCAAAACCTGTCCGTGTCCCTTGTCCGGAATGCGGGAAAGTTTTCACCAAAAAAACTTATATGAACAACCACTACAATTTGTTCCACACAAAGAAATCCAAACATTACTGTGAGATCTGCGCAAAGTCTTTCGCAACGCCGTTTGGATTACGCAACCATAGACAACGAATACACGAGAAGAAGTTACCGCCCAAAAACAAGATATGTGACATTTGCGGCAGAGGTTTTAGTGCGAACCGTATTCTCATAAACCACCGACGTACGCACACCGGGGAGAAGCCCTACCAGTGCTCGCAGTGCCCGTCGGCCTTCGCCCAGCTCTGGGCTAAGAAGTCACACGAAAGGTCGCAACACAAGCTCTGA
- Protein Sequence
- MDSIKIELINYDRICRGCLSLERNVAPLGEFSDLFYKISEPQGFMYDNVLLCWECKGVLRKTWRFQQRIHQAQFFFQQPEFFQQQLNNLKTYSLSTLQSVAIDNNYETIQEDYKEKEQKVKLEIEQDIDKINSDLDDNIHEVYGGEEIKIELKEEVRDGKETKEEEKKKKPLIEKEINVQKEKWQSKYIKCAIVTENNLNNGENLYIKKYLNDKVLEELLERGMMRFKKNSCKNVCKMCQMAFQKKIDLKRHMISKHLPGNGPYKCSECRYTGKLTTMSELRAHFGSHAVYKCKLCLEVCRSLSEIKSHLLHVHRHNYQCMKCEKSFDAFREFFWHYKDLHDRMICDHCGRTFIKKKTLEAHMKRQHLPPVCCVCGRLFKNADALESHTRRVHPELHYDVSNKELSFCVECNKQFSSVYKYRRHLSTAYIHRPPKPVRVPCPECGKVFTKKTYMNNHYNLFHTKKSKHYCEICAKSFATPFGLRNHRQRIHEKKLPPKNKICDICGRGFSANRILINHRRTHTGEKPYQCSQCPSAFAQLWAKKSHERSQHKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01143360; iTF_01141913;
- 90% Identity
- -
- 80% Identity
- -