Pelw010777.1
Basic Information
- Insect
- Papilio elwesi
- Gene Symbol
- -
- Assembly
- GCA_029641285.1
- Location
- CM056349.1:1103013-1106062[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0017 0.15 13.0 0.1 1 23 274 297 274 297 0.95 2 12 0.12 11 7.2 1.8 1 19 315 333 315 337 0.91 3 12 5.8e-05 0.0051 17.7 2.7 2 23 343 364 342 364 0.96 4 12 5.8e-05 0.0051 17.6 0.5 1 23 368 391 368 391 0.96 5 12 0.0061 0.54 11.3 3.5 2 21 395 414 395 416 0.93 6 12 2.3e-05 0.002 18.9 0.5 2 23 497 518 496 518 0.95 7 12 0.34 30 5.8 0.1 2 23 538 560 537 560 0.95 8 12 1.3e-06 0.00012 22.8 4.2 1 23 566 588 566 588 0.98 9 12 4.2e-05 0.0037 18.1 3.3 1 23 593 615 593 615 0.98 10 12 8e-05 0.007 17.2 2.8 2 23 622 644 621 644 0.95 11 12 5.9 5.2e+02 1.9 0.9 1 19 652 670 652 671 0.83 12 12 0.037 3.2 8.8 1.7 3 19 684 700 682 705 0.93
Sequence Information
- Coding Sequence
- ATGGAGATCATATACCCTGTGTTATTAATTCCTAAAGAGTGTGTAAAACTAAACAACAATGCCTCGCTGCTTGACAACATCATATTAGATATTACCATCACATCTCCCAACACTAAAGGCGAAGCTATATGCATTTACACAGGTTGTTGTCACATTAAGTTTACAGAAAAAGAATTCAGCCAGAATAAATGTACTCAGGGACtggaatttataaatattgaagataCAAAATCAGTTCCGGATGCAGCAGTTCAATCAACATATCCATCCAACATATGGATAGATCCAACTAGGAGcccttatatatataacaactaTACTGCAAATGGCCTGCCAGCACAACATTATGTCTACAATCATCAAGCCAATCATGTAACCGTCCAACAGCATAACACATACATTACTCAAAATGTATATAGCTATCCTGAAACCATACATTATTCATCACCAGAAGAATATGGCTTTGAAACATTGATAAACCAAAACAATACAACAGATTTAAACCACCTATTCGATGGTGATGACTTGGAAGAATGTGGAATGCTACTCGAGGAGATTACCTGTGAGAAAGAGCCACCGCTTTCAACTGAGTCAATTGACACCGTCATACAGAATGACAATAATGCATTAAAGCAACTTATGTCTAATGGTATTCAGATACAATCCAAACCACAAAAGACCATAATATTTATGGGGCCGGATTGTGGCCAGACCATTCAGAAGATTGCAGTTAATGATCCATCTTTAAAATGCACCTCGGATGATAAAATTTCAACAAACATGGATATTGACAACAATAACAATGGCAACCATAAGAAGTACCAATGTGAAAAATGTGATCAAATATTTGATCAAATAATAGCATTCAAGCAACATATAGTTGTATCACACGAACGAAGCAAAATTAACCGCGGGTCGGAGAGCGACAGTGAAATTAAAGTATTCATCTGTGCCCAGTGCGGGAAGAAGTTGAAGTCGCAAGAGAAGTTTGAACTACATTGCCTTGGCCACGGCAACCCGGACTTGGAATGCGAAAGGTGTAACAAGGTTTTCGCATCTAAATTTAGTTTGCGCACTCACCATAAAATTCACATGCGTAAATATCCATGTCCAAGTTGTACGAAATCCTTTAACAAACTCACAGAATTAAGAACACATCTTGCCAAAGTACATTCAAGTCGCAAGTGTGATGATTGCGATTACacaacaaacaatcaaacagaGTTACAAAAGCACGAGAAATGTCACAATTGGCGGGAAAGTACCGAGAACTCTGAATCTTGTAGTTTTTTTCTCGATGATGGTGTCACTGACATAGATAATGAATCGGATTCCGGGAATATCTACGAAATGCCGATGGATATTGTTGACAATGACTCGATTGAAATcgatataaaaaatgcaaatgatGTGCTTGCTAAAGTGATGTccaacaagatttttttacttaatgcgAGGAAGGGAAGAcaaaacaaaagatttaaaaagAGTTGTGATGTTTGTTCAAAAACCTTCACCAGAATTGGAGACCTGAAGCGGCATCTCATCGAGCACGTGATTAAGAGCACCCTAGCAAAAAACCCGGTCAACAAAGACGGCACCCTGAACATACAATGCGAGGTTTGTCAAGTGCAGGCTTTCGCTAAGGTAGATAAATACAAGGCCCATTTGCGCGAGCACGCAAAATTAACTTTGTACCAGTGCACATTCTGCAATAAATCGTTCAGTGACTCGAGCAACTTCTCGAAACATAAGAAAATTCATGGTTCCGCGTACTACCAGTGTGACCTCTGCCtaagaaaatttaattctaaaaagATGCTCACCAAGCACATGCAATATCACAAGGAGAACAAGCCGTTGCCGTGTCGCTATTGCGATAAAACCTTTCATTTTGAGTCGATGTTAAACAAACACATTAAAAGCACCCACAACAAGGCTGCAGGGACACGATTCCGCTGCAATTTTTGCCAGGCTTATTATAAAACGTTGAAAGAGAAATGGGACCACGAATGGTACATTCACAATGTTAGGAAGGTAAAAATCGATTGTGCCGTATGCAGTCGTAAGTTCAGGAAGTATGCCGAGTTGAAAAGGCACTGTTTGGACAATCATGACTTGGAAATTCCACCAGCCAAGATGTTCTTACAGCAACAGCAACctgaaaagtaa
- Protein Sequence
- MEIIYPVLLIPKECVKLNNNASLLDNIILDITITSPNTKGEAICIYTGCCHIKFTEKEFSQNKCTQGLEFINIEDTKSVPDAAVQSTYPSNIWIDPTRSPYIYNNYTANGLPAQHYVYNHQANHVTVQQHNTYITQNVYSYPETIHYSSPEEYGFETLINQNNTTDLNHLFDGDDLEECGMLLEEITCEKEPPLSTESIDTVIQNDNNALKQLMSNGIQIQSKPQKTIIFMGPDCGQTIQKIAVNDPSLKCTSDDKISTNMDIDNNNNGNHKKYQCEKCDQIFDQIIAFKQHIVVSHERSKINRGSESDSEIKVFICAQCGKKLKSQEKFELHCLGHGNPDLECERCNKVFASKFSLRTHHKIHMRKYPCPSCTKSFNKLTELRTHLAKVHSSRKCDDCDYTTNNQTELQKHEKCHNWRESTENSESCSFFLDDGVTDIDNESDSGNIYEMPMDIVDNDSIEIDIKNANDVLAKVMSNKIFLLNARKGRQNKRFKKSCDVCSKTFTRIGDLKRHLIEHVIKSTLAKNPVNKDGTLNIQCEVCQVQAFAKVDKYKAHLREHAKLTLYQCTFCNKSFSDSSNFSKHKKIHGSAYYQCDLCLRKFNSKKMLTKHMQYHKENKPLPCRYCDKTFHFESMLNKHIKSTHNKAAGTRFRCNFCQAYYKTLKEKWDHEWYIHNVRKVKIDCAVCSRKFRKYAELKRHCLDNHDLEIPPAKMFLQQQQPEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01147596;
- 90% Identity
- iTF_01143307;
- 80% Identity
- -