Pelw001575.1
Basic Information
- Insect
- Papilio elwesi
- Gene Symbol
- -
- Assembly
- GCA_029641285.1
- Location
- CM056337.1:9240364-9246956[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00015 0.013 16.4 0.1 2 23 204 226 203 226 0.94 2 12 1.6 1.4e+02 3.7 0.2 5 23 235 253 234 253 0.93 3 12 0.0096 0.84 10.7 6.9 1 23 287 310 287 310 0.90 4 12 0.28 24 6.1 0.2 5 23 319 337 317 337 0.94 5 12 0.0028 0.25 12.4 0.3 3 23 345 365 343 365 0.96 6 12 7.9e-05 0.007 17.2 5.8 1 23 373 395 373 395 0.97 7 12 5.8e-05 0.0051 17.6 0.5 1 23 404 427 404 427 0.97 8 12 0.00019 0.017 16.0 0.2 1 23 433 455 433 455 0.97 9 12 9.4e-07 8.3e-05 23.3 2.7 1 23 461 483 461 483 0.98 10 12 0.00042 0.037 15.0 0.7 1 23 488 510 488 510 0.98 11 12 2.4e-06 0.00021 22.0 4.0 1 23 516 538 516 538 0.97 12 12 0.0002 0.017 16.0 2.1 2 23 545 567 544 567 0.95
Sequence Information
- Coding Sequence
- atgactATGAATTTTAAAGCATTATGTCGACTATGTGCAAAGGAAGACGAATTTACAAAAGACTTGCTACACGAAAGCAATCAGAATCTCCTTAAAATAATCAAAGAATATGTGCATATTGTTattaaTGATAACGACAATTTACCTACAAAAATATGTCTAAACTGTGAAGAAAAAATGGTTGAATTTCAGTTGTTTGTTTTGGAATGTAGTaaagttcaaaaaatattaccaGATATTTGTAAGAATCTCAATATAAAGCAAGAACACTTGAGCAACAATGAAGTCATTGTTATTCAAGCAATTAAACCTGAGGTCAAATCTGAATTCACACCAGAAGACATAGTAAGTGTAATAGACAATGGAACATCATTGTTGGAATTCGCAAGTGATGAAGTTGAAAACAATATAAGTAATGACGACGAGGAggacgatgatgatgatgagtttgatgatgatgatgactctCTTGAGGATGTTTCAATAGCACaattgaaacaaattaaaaaaaaacgcataaAGAAAAAATCATTGACTGAAGAGGAAGCTAATGAATTCCAAAAAGTTCtgcaaaaatcaaatattaaagttaaggaTATTGTTAAATTAAAATGTGATGTTTGTACAGAGACATTCAAGTCTTGGAGCGCTCTGGGCGTCCATTACGCGAAGAGCCACAAAAGCAAGCCCCTCGTGTTCTGCATCTGCGGATTTGTCATCAGATCGAAGAGCGTGCTTTACAAACACGTGTCCGATCACAAAATAGAAAGTAGGAAATTTAGATCCGCCAAAGATTCCGACGGGGACAAGCGGGTCGACTCCAAGTATTCGAGCCTTaatgttaaagattttattaaTTTTGTATGCAATAATTGTCACAAAGAATGTTCGAGCTGGTACACATTGAAGGCGCACTGCCAGCGGGAGCACAGCACCTCGCCTTCCGTGAACTGCGTCTGCGGGATAACGCTTAAATCTAAGTCTGTCTTGTATAAACATGTCCAAGATCACAAAAATCCCAATTTCCTAGCgTGCGATAAATGTCCGAGGATAACAAAAACGATAGAAGCATTGAACAAGCACAAAATGAGACACGTACCGAAGTCAGAGAGACGGTTCTGCTGCACCACTTGCAACAAGACATTCAACAGCCGGGAGACTCTGAAGTCACACGAGAGGTCGCACATACCTATAGAAGAGCGGAAGGTATTCCGATGTGATATATGCGATCTGAAGTTCACGACGCGGTCGTCGGCGGCGTCGCACAAGCGCGTGGTGCACGACAAGATCAAAAGCTACGTGTGCGACTTGTGCGGCTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATCCACAGCGACGACAAGCCCTTTGTCTGCCGCAAGTGCTCCAAGCCTTTCAAGACGTACTCGAATCTGAAGACGCACATGGACACGCACGAGGACACGTCATACGTGTGTTATGTGTGCAGCCGCGTGCTCAACAGCCGGCGCACGCTGCGCAAGCACCTGCTGGTGCACGAGGACAAGTGCCGCCACGTCTGCTCCTACTGCAACAAGGCCTTCAAGCGTAAGCAGACGTTGAAGGTGCACATGTACATGCACACGGGCGATAAGCCGCTCACGTGCAAGTGGTGCGACGAGCGGTTCGCGTATGCGTCCACGCTACGCTCGCACCGCCTGCGCTGCCACGCCGACAAAATGGTGAGCGCCGCGCACGGGCACGCGCGAGCGCCACACGAATCGCGTTCATCGTTACTCATACCTAAAGTAAATATGCactaa
- Protein Sequence
- MTMNFKALCRLCAKEDEFTKDLLHESNQNLLKIIKEYVHIVINDNDNLPTKICLNCEEKMVEFQLFVLECSKVQKILPDICKNLNIKQEHLSNNEVIVIQAIKPEVKSEFTPEDIVSVIDNGTSLLEFASDEVENNISNDDEEDDDDDEFDDDDDSLEDVSIAQLKQIKKKRIKKKSLTEEEANEFQKVLQKSNIKVKDIVKLKCDVCTETFKSWSALGVHYAKSHKSKPLVFCICGFVIRSKSVLYKHVSDHKIESRKFRSAKDSDGDKRVDSKYSSLNVKDFINFVCNNCHKECSSWYTLKAHCQREHSTSPSVNCVCGITLKSKSVLYKHVQDHKNPNFLACDKCPRITKTIEALNKHKMRHVPKSERRFCCTTCNKTFNSRETLKSHERSHIPIEERKVFRCDICDLKFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKPFKTYSNLKTHMDTHEDTSYVCYVCSRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRKQTLKVHMYMHTGDKPLTCKWCDERFAYASTLRSHRLRCHADKMVSAAHGHARAPHESRSSLLIPKVNMH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01148305; iTF_01143294;
- 90% Identity
- iTF_01143294;
- 80% Identity
- -