Basic Information

Insect: Papilio elwesi
Gene Symbol: -
Assembly: GCA_029641285.1
Location: CM056341.1:8029886-8036894[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.5e-06 0.0003 21.5 1.3 2 23 439 460 438 460 0.97

2 8 3.7e-05 0.0033 18.3 2.4 1 23 466 488 466 488 0.98

3 8 1.9e-06 0.00016 22.4 0.3 2 23 497 518 496 518 0.97

4 8 5e-06 0.00044 21.0 0.7 1 23 524 546 524 546 0.99

5 8 1.7e-07 1.5e-05 25.6 1.8 1 23 552 574 552 574 0.98

6 8 9.4e-07 8.3e-05 23.3 1.2 1 23 580 602 580 602 0.97

7 8 7.3e-05 0.0064 17.3 7.2 1 23 608 630 608 630 0.97

8 8 5.1e-05 0.0045 17.8 0.9 1 22 636 657 636 657 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.5e-06	0.0003	21.5	1.3	2	23	439	460	438	460	0.97
2	8	3.7e-05	0.0033	18.3	2.4	1	23	466	488	466	488	0.98
3	8	1.9e-06	0.00016	22.4	0.3	2	23	497	518	496	518	0.97
4	8	5e-06	0.00044	21.0	0.7	1	23	524	546	524	546	0.99
5	8	1.7e-07	1.5e-05	25.6	1.8	1	23	552	574	552	574	0.98
6	8	9.4e-07	8.3e-05	23.3	1.2	1	23	580	602	580	602	0.97
7	8	7.3e-05	0.0064	17.3	7.2	1	23	608	630	608	630	0.97
8	8	5.1e-05	0.0045	17.8	0.9	1	22	636	657	636	657	0.95

Sequence Information

Coding Sequence: ATGTGCGAGTGGCTGTCGTGCGCCgagtggtgcgacctccggttATTGTGTGGCGGCCACAGTTTCAACGCACACCGCGCCGTCCTTGCCAGTGTTAGCACGTATCTTAGAGAAGTGCTTCTCTCATGTCCACCAAACGATTCGCCAGCGTATATTATCTTGCCAGATTTTGATCTCGATGCTGTGTCATccgttttatactatgtttatCATGGCGAAGTTGTTATTCAAAGAAATCAGCTTAACAAATTTTTAGACATCATCcgaaatttaaagatttatataGATCctcaatatttgtttaaaattagtaACGGTATAGAAAATCTCCACTTAGATCTTAGCAGTAACATGTATCAAGAAAATAATTTGTCGGATGATACCACGTCTTTGGATGCAAATAGCGAAAGCTGCCAGTATGCTAATATAAAGAAAGGCATCGAAAATATTGTGTGTAAAGTACAATATTCGTTCGATGGTTTGGATTTTGTAGATAAGCAGATCCGGCGAACTCGGAGTGAAAAGTTCAGCCCATCTGCTAGAGATCTTGCCGCGCGATGCGAAGACCGACAAAGAGGCTCGTTGCTAcgtgatttatttattgagaCAAATGCTCGGAACGGTAATGGTAACGGTCTGGGGGCAAGCGTGTCGGCAATATCTAATGAGCACTATCGTGGAATGACATCTGTTCTTTTCACGAATGCTAATGCCAGCCATCCTAACGACACACTCGCTGAGATACACAAGATCAAGCCCGAACTCAGATACAATATATCACCGACGTCTAACCGAGCTCTGCTGTCTTATGAAGAATATCTTTCTCTGAACAACTGTTCATCAGAATCGTTTCTCAAATCATTCATGGAAGCTAACAGAGttggGTCAGAAAGTTACCCTCTAGACCTAAGCATGTCAATTTCCAATAGTAATGCTGTAGATTGTCTATTTGAGAAGAAGAAATGCTTGAAGAGTAATCCCTTGATGATAGAATGTAATGAACAAGTAATTACAACTACCAACAATAGTGTAaaggatttaaattcaaaaacagCACTGGTAAAAGGAGCCTTAGAGAATCCCTGGTGTCCGCGGTTACCTTATCACTATAAACCATTTCGTAGAAAAACTGTTGATACCATTCAAGTAAATTCTGTCAAGAAACATCTCGATACGGGTAaggataaaaacaataatataaaccaGTTAACAGCTCTTTTGGCCACGAATGGAGGTATCAAAAACAATTCTAATAGTGAAATTATAGATGCAGTAACATCACGTTCGCGTCGTTTGAGCGCCAACGGCGACTTGAAATGCACAACTTGTAATCAGGTGTTCACAAGTGAGGAATCTTTCACTGCACATATGCGCCGGCATTCGTCTGTGACGCGCTACAGCTGCGTAGAGTGTTACAAAACATTTTCTCAGCTCCGTAACTTTAAATACCACATGTCCGTGCACCGCGGGACTAAGGAATTTGCGACCACTTGCCCCGTATGcgggaaatattttaatgatagaGGATATTTGAGTAGTCATATGAAAATTCACAGgAATCGGAAGGAATACAAGTGTTCAATGTGTCCAAAGTCGTTCAACCAGCGAGTGGCCTACAATATGCACGTGAGGATACATACAGGCGTGAAGCCCCACGTGTGCGCGGAGTGCGGCAAGGCGTTCTCACGGAAGATGCTATTGAAGCAGCACCAGCGCACGCACTCGGGCGAGCGGCCCTACGCCTGCCCGCATTGTGACAGGCGCTTCGCCGACCGCTCAAACATGACCCTACATCTGAGACTACATActgGAGTCAAGCCCTTCTCATGCTCGCTGTGCCCTAAATCGTTTACAAAAAAGCATCACTTGAAATCCCACCTGAACTTCCATACTGGCGCCAAGCCGTACTCGTGTCCTAGATGTAAACTCGCCTTTACTCAGTCTTCGAACATGAGGACGCACCTCAAGAAATGTAACGCGCCTGATGCGATTGACACGTCTGACGCCACTTCTTAA
Protein Sequence: MCEWLSCAEWCDLRLLCGGHSFNAHRAVLASVSTYLREVLLSCPPNDSPAYIILPDFDLDAVSSVLYYVYHGEVVIQRNQLNKFLDIIRNLKIYIDPQYLFKISNGIENLHLDLSSNMYQENNLSDDTTSLDANSESCQYANIKKGIENIVCKVQYSFDGLDFVDKQIRRTRSEKFSPSARDLAARCEDRQRGSLLRDLFIETNARNGNGNGLGASVSAISNEHYRGMTSVLFTNANASHPNDTLAEIHKIKPELRYNISPTSNRALLSYEEYLSLNNCSSESFLKSFMEANRVGSESYPLDLSMSISNSNAVDCLFEKKKCLKSNPLMIECNEQVITTTNNSVKDLNSKTALVKGALENPWCPRLPYHYKPFRRKTVDTIQVNSVKKHLDTGKDKNNNINQLTALLATNGGIKNNSNSEIIDAVTSRSRRLSANGDLKCTTCNQVFTSEESFTAHMRRHSSVTRYSCVECYKTFSQLRNFKYHMSVHRGTKEFATTCPVCGKYFNDRGYLSSHMKIHRNRKEYKCSMCPKSFNQRVAYNMHVRIHTGVKPHVCAECGKAFSRKMLLKQHQRTHSGERPYACPHCDRRFADRSNMTLHLRLHTGVKPFSCSLCPKSFTKKHHLKSHLNFHTGAKPYSCPRCKLAFTQSSNMRTHLKKCNAPDAIDTSDATS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01141812;
90% Identity: iTF_01141812;
80% Identity: iTF_01141812;