Pelw018552.2
Basic Information
- Insect
- Papilio elwesi
- Gene Symbol
- -
- Assembly
- GCA_029641285.1
- Location
- CM056364.1:1507625-1509976[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.6e-07 4.9e-05 24.0 2.1 1 23 8 31 8 31 0.95 2 20 0.00069 0.061 14.3 0.4 2 23 37 59 36 59 0.95 3 20 5e-06 0.00044 21.0 0.3 2 23 68 90 68 90 0.97 4 20 1.4e-05 0.0012 19.6 1.9 2 23 99 121 98 121 0.94 5 20 7.3e-05 0.0064 17.3 0.2 3 23 130 151 129 151 0.96 6 20 7.6e-06 0.00067 20.4 1.1 2 23 160 182 159 182 0.95 7 20 2.7e-06 0.00023 21.9 2.1 1 23 188 211 188 211 0.98 8 20 4.9e-05 0.0044 17.9 3.6 1 23 261 284 261 284 0.96 9 20 0.11 9.3 7.4 0.2 1 23 310 333 310 333 0.92 10 20 0.62 54 5.0 0.5 2 21 341 360 340 361 0.94 11 20 0.013 1.1 10.3 0.3 2 23 370 392 370 392 0.95 12 20 0.00018 0.016 16.1 5.8 1 23 412 435 412 435 0.97 13 20 2.1e-05 0.0019 19.0 2.3 3 23 443 464 442 464 0.97 14 20 2.5e-05 0.0022 18.8 4.5 2 23 471 493 470 493 0.94 15 20 0.01 0.88 10.6 1.5 1 23 499 522 499 522 0.96 16 20 0.19 16 6.6 4.8 2 23 530 552 530 552 0.95 17 20 0.00084 0.074 14.0 0.6 1 23 559 582 559 582 0.96 18 20 0.0071 0.62 11.1 1.2 1 23 589 612 589 612 0.95 19 20 0.0021 0.18 12.8 2.3 2 23 625 647 625 647 0.96 20 20 1.4 1.2e+02 3.8 0.6 1 13 697 709 697 711 0.88
Sequence Information
- Coding Sequence
- ATGTATCAGAATCATACGGACTATGTATGTGATTACTGCAGCCGGACATTCACTCGAAAGTACAATCTGCAAACACACATTGAGAATTATCACATGAACTCCTCATGTTATTGTCAAATTTGCGACCAGAGATTCGGGAGCCCTGCAGGCCTACAGTTGCATCTCTCAAGAGGTCACAACAGATATGGTCAGGCATTTCCCGAGTGTGACATATGTGGACGTATATTCACAAGGAAACAAAACATAACATCCCATATGATAACAGTGCATTTACAAAGTGGACGGCCTGAGATCAGATGTCAGTTGTGCGAGAAGACATTCACAactgaaaggaatttgaaaagaCACACTAATCAATTACACAATCCTAATGTAGAATATCCGATATGTGATTTGTgtaaaaaagtgtttaaaaGCAAACCTGCTCTGATAACTCATATATTGTCCACACACCAGCACATTGATAAAGAATCTCTCAAATGCCAACTCTGTGGAAAAGTTTACACCAATACtagaaacttaaaaagacaCGTAGAAATGTTTCACGGTGAACGAGGGGAGTACAAATGTAGCATTTGCCCTAAAGTTTACACATCTAATCAGAGCTTGAGACGCCATAATAAGACTAGGCACAATCCAGATAGTGTTGCTCAGTACCATTGCCAAATTTGCTGTAAAACCATACATGGGAAGAAAAATATAGACACCCATATCAGCTCATGTAACACCCAAGATGACCCTAAAGAATACAAACAATTTGATTTCAGATCTGAGCCAAGATTTAACTGTAGCGAATGTAACAAATCCTTCAGTCATGAACCTTTATTGCGCCATCATGTCAAATCCGAGCATACATTCCAAGACTTCTATAACTACTGCAAAAAgtcacttttaaaaataatgctgCAGActaacacaaaatatttttttaactgtgaATTCTGTAACAATACTTTTGGTGGTATCGATGAGCTTAAAGATCATTTGCTCTTTATTCATGAGAAATATTACAGTCTCTCAACATGCAATGTTTGCTTCGGTAAGTTCTATACAGAGGAAACTCTATCGGAACATCGAAAATTTTGCTTTCCACCTCCAGATGTCAATTCATGCGAGTACTGTGATAGACTCTTCACTGACATTGCCAGCCTGGAATTCCACATGAAGATCTTTCACCCGCAATCTCATATATCCTCAAGCAACACTGACGAAACATACACAGATCTGAATTCTTATAAATGCGTGCATTGCGACcgtgtttattataataataggtCATTGAAACATCACATTAAGTTAAAACACACCAGTGACCCAAATGTTGATTGTCACTACTGTGGCAAGATCTGCAGTAACAAGTACTATCTTGCCTCACATATCAAAATAGTACATGGCAATACATCATGCTCCAAATGTGATTACTgtgacaaatgttttaaatccaAAAGGAATATAAGACGGCATATTGAATATACACATCTTGGCATGCAAAGGTACAAGTGTATTGAATGTGAGACGCTGTTCAAAGAGAAGAGGAGCCTTAGAAAACATGTAAGGATCAAACATCCGCATTCAACATTATTCCCCCAATGTCACATCTGCTATAAAAGATTTGAATCTGCCAAATCATGtaagatacatttaaaattactgCATTCTTACAATGTGACAACTCACCCTTGCGGTCTATGTTCGATTTCCTTCAGTTCCATTGAAGCTCTTAAAAGCCATTATCAAACAAATCACTCAGCTGAAgatgaaatttataaatgtgaagaGTGCAACATTGTCTTTAAAGGGCACAATAAGTTCGATCAGCACAGAGAGGTCGCTCATTCGAATCTAGTATCAATTACTCGTAAATCGGTACCGCGTTGCGTTATATGCATAAAAGATTTTAGCTCGAGAAAGACTTTGAAAAGACACATAAAGAAGTTTCATGACGAATTCGACGTTGACCACCTCGCTAACTACGCATGGCTTGTCAAAATCACCAGCGTAGAATGTGAAGACTGTGTAAAATCGTTAACCGATGAATTGAAAAATGCACACTATGAAAAGCTAAAACAATCTTTAGAATCGATCATATTTAAATGTGATACATgtttaaaatcttataataCGTTAGAATACTCAATTTTGAGGCATAAATTGAATAATGCATCTAGAAGTAAAATGATCTTGAGTGAATTTTGCACTGCTGAGTTGAGCGAGGGCGATGAACATGAAAACGCGTTAGATATGTCACCACACTGCACCGAAGTTATGGAACCTGAGACCACAATGAATGAGACAAATATTGaactaagtaatattttatatgaaataaagacTGAACCTGCATCTCCTTAG
- Protein Sequence
- MYQNHTDYVCDYCSRTFTRKYNLQTHIENYHMNSSCYCQICDQRFGSPAGLQLHLSRGHNRYGQAFPECDICGRIFTRKQNITSHMITVHLQSGRPEIRCQLCEKTFTTERNLKRHTNQLHNPNVEYPICDLCKKVFKSKPALITHILSTHQHIDKESLKCQLCGKVYTNTRNLKRHVEMFHGERGEYKCSICPKVYTSNQSLRRHNKTRHNPDSVAQYHCQICCKTIHGKKNIDTHISSCNTQDDPKEYKQFDFRSEPRFNCSECNKSFSHEPLLRHHVKSEHTFQDFYNYCKKSLLKIMLQTNTKYFFNCEFCNNTFGGIDELKDHLLFIHEKYYSLSTCNVCFGKFYTEETLSEHRKFCFPPPDVNSCEYCDRLFTDIASLEFHMKIFHPQSHISSSNTDETYTDLNSYKCVHCDRVYYNNRSLKHHIKLKHTSDPNVDCHYCGKICSNKYYLASHIKIVHGNTSCSKCDYCDKCFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRIKHPHSTLFPQCHICYKRFESAKSCKIHLKLLHSYNVTTHPCGLCSISFSSIEALKSHYQTNHSAEDEIYKCEECNIVFKGHNKFDQHREVAHSNLVSITRKSVPRCVICIKDFSSRKTLKRHIKKFHDEFDVDHLANYAWLVKITSVECEDCVKSLTDELKNAHYEKLKQSLESIIFKCDTCLKSYNTLEYSILRHKLNNASRSKMILSEFCTAELSEGDEHENALDMSPHCTEVMEPETTMNETNIELSNILYEIKTEPASP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01144707;
- 90% Identity
- iTF_01143272;
- 80% Identity
- -