Pelw009280.1
Basic Information
- Insect
- Papilio elwesi
- Gene Symbol
- -
- Assembly
- GCA_029641285.1
- Location
- CM056347.1:591317-598466[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-10 3.2e-07 30.4 0.0 3 39 175 211 173 215 0.90 2 4 3.9e-12 8.8e-09 35.4 0.4 2 39 228 265 227 268 0.93 3 4 1.6e-15 3.7e-12 46.2 0.1 2 45 283 327 282 327 0.96 4 4 5.2e-19 1.2e-15 57.4 0.1 1 43 334 377 334 378 0.96
Sequence Information
- Coding Sequence
- ATGCCCAGCTACGGAGTTTACCAAGTGAAATGCGAGCCGCCTTCAGACGTAGAGGATTGCGACTCACAATTCGCGCACGAATTCCTGCCGAATCAGTCCACCCCGCCGCTTTTGGCCGCCGTGAAGGTGGAAGCTGtcgaggaggctaatgaggatGCCTCGTCGCACATTCTGCAGCAGTTGCAGGTGGGTGTTGAGTTGGAGCTGACGCCGCCCGCGCCAGCCGCGCCGGCCGCCACGCcggtgcgcgcgcgccgcccgccgccgcacGCCTCGCCGCACGCCGCGCACAGCTTCGAGACCCTCGAGCCCGCTCGCGCAGCCACCGGCACCAGACTGCTGGACCGCCACAAACACCTGCTGACTACCAGTGCCGCGGAGCCAGACTTCATCCCTCTGCTGCCCGTAAAGGATGAACCGCTGTCGGACGGGGAGCAGCACGCGGCGAGCGACGAGGCGAGGTCGTGCGGCGGCAGCAGCGACGGCGCGGAGGCGCGCGGCAGCCCGCGCGGCTGGGGCCCGCGCGACATGCAACGCGCGCTGCAGGCGCTGCGGGACCGCCGCATGACCCTCACCAAGGCGTCCGCAACATATGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCGGCGGATGGGCATCGACACGCCGAAGCGCGAGACCGCCGCCAAGAGCTGGGGCGAGGCCGAGCTGCGCGCCGCTCTCGCCGCCCTGCGCGCGGGTACGCTGTCCGCCAACAAGGCCAGCAAGGCTTACGGTATACCGAGCAGCACCCTGTACAAGATAGCACGTCGCGAGGGCATCCGATTGGCGGCGCCATTCAACGCGGCGCCGACCAGCTGGCGGCGTGGCGACCTGCAGCGCGCTTTAGCGGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGAGCCGCCGCGCAGTACGGCATTCCCACCGGTACTCTGTACGGAAGGTGTAAACGAGAAGGCATCGAGTTGTCCCGCTCCAACCCCACGCCGTGGTCGGAGGACGCCATGGGCGAGGCTCTGGAAGCCGTCAGGGTGGGTCAGATGTCGATAAACCAGGCGGCGATCCACTACAACCTGCCCTACTCCTCGCTGTACGGCAGGTTCAAGCGCTGCAAGTACCAGGCGCAAGGTCTACCGTGCAACCAACAATTGGACACACAGAATAACCTCGAAATGGAACATCAAAACGTTCACCAGAACCATGATACCTTAGGGTACTACCACACCCTTCCGTCGCACGTCCACGGTACGACTGAGGACCAGACGAACTTACAGATCCCGTACAGCCAACTCCTTGGCGAGGTCCACGATGCAATGCACGGCCACTGGCAGGAGCAGTACGGCAGCCAGGGACTCTACTACGCCCAAGGATACAGCGGACTGGCCACTAGTTGA
- Protein Sequence
- MPSYGVYQVKCEPPSDVEDCDSQFAHEFLPNQSTPPLLAAVKVEAVEEANEDASSHILQQLQVGVELELTPPAPAAPAATPVRARRPPPHASPHAAHSFETLEPARAATGTRLLDRHKHLLTTSAAEPDFIPLLPVKDEPLSDGEQHAASDEARSCGGSSDGAEARGSPRGWGPRDMQRALQALRDRRMTLTKASATYGIPSTTLWQRARRMGIDTPKRETAAKSWGEAELRAALAALRAGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRRGDLQRALAAIRCGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQAQGLPCNQQLDTQNNLEMEHQNVHQNHDTLGYYHTLPSHVHGTTEDQTNLQIPYSQLLGEVHDAMHGHWQEQYGSQGLYYAQGYSGLATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -