Pdem020182.2
Basic Information
- Insect
- Papilio demoleus
- Gene Symbol
- -
- Assembly
- GCA_029286655.1
- Location
- JAGSMY010000028.1:2490961-2493661[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.033 3.2 8.9 3.0 1 23 260 283 260 283 0.75 2 11 0.19 18 6.6 3.7 3 23 361 382 357 382 0.87 3 11 0.00033 0.032 15.2 0.7 2 23 388 409 387 409 0.96 4 11 0.013 1.3 10.2 1.9 2 23 431 453 430 453 0.94 5 11 0.0018 0.18 12.9 2.9 1 23 457 479 457 480 0.96 6 11 0.071 6.9 7.9 0.4 2 23 503 525 502 525 0.90 7 11 0.006 0.58 11.3 1.6 1 23 535 557 535 558 0.95 8 11 0.0081 0.78 10.9 1.2 5 23 577 595 575 595 0.95 9 11 0.013 1.3 10.2 1.2 1 23 601 623 601 623 0.94 10 11 0.36 35 5.7 3.5 1 22 629 650 629 653 0.91 11 11 3.2e-05 0.0031 18.4 0.7 2 23 705 726 704 726 0.97
Sequence Information
- Coding Sequence
- ATGTCAtctgaaaatttacaaaatacttaCTATAATCAAGATATAAATGgaacaattataaaacaagaaaatacagattatatagaAGTAAAAAGTGAAGTTATTGAAAATGAATcagaaatatttgataatgttcaaattaaaaaagaatatatacCAActgaaaatgataaaacacaAGAAATTAACTCTGAAGACACTAATACTgctatgttaaatatttgtatggagAATAGTAAAAATGTGGTAAATgaagtaacaaatatatatgatGATAGTATAGATATTAAACAAGAAAATGATATATTGGAGGGAAATGACTATGATGAACATAGTATGGACAGCAATGAAGCCAAAGCATTACATAATGTTGAAGTATGCTTACAAGATGGCATTAAAGTTAAAGTAGAGAATGAAACACATGAGgaaaatcaaaattatatcttaGATGATGTAACCATAAAGAATGAACTTGAGACAGTCACAGAAACtgatttaatatcaaatgaaataattaatacaactgCAATAAGTAATCAACTCGGTCTAACAAATTCACAAACGGGAACTTTATTTATGGAAATTTTACCTATGGATATAGACTCACGTGTTCCACTCGGTAAAGTTTGTAATCCAGAAGAAATACTGCCGACATACCATGACAATGATGCTATCGACTATGCAGACTCCTTCCAATTAAACTCAATAACCAGCACCATGATGACATTAGAACAAGAAGCTTGCGAACTTTTAGAAACCAAAAAAGtagataaaaattacacatgttcaaaatgtctaaaaacatttagaaattCACCATATCTGTTGAAGAAACACGAAAAATATCATAAAGCTATGGAAAGTCGTGAACTAAGTAAagcaaaaaagttaaaattgaaattaaaccCGGATTTGGTGAAGAAAGAACAAAAATCATTAGCCCAGACCAGATCACAGCCCAGAGCTAATGTTAAAGAAGGTTATGAATGCACTTGTGGTAAAGTTTACCAGCGCAAGACAAGATTGGAGAGTTGTTTACGTTCACACAATACAGAAAAAGATATAGATCCATGTCTGTGGTGCGGAACTTGTTGTAAACAGTTTAAGGATAAAGAGGAATTGTTACTCCACAGAAAACGAATGCACAGAAAAGCTATGATTCCATGTAAATTTTGTCCCACGGATTACAAAAACAGAAAAGAACTAttcaaacatttacaaatacatcAGAAAGTACAAGTTATGGAGTACAAAGTGTTATCAGAAGTCGTGAAAGGAAAGCAGAAGTTGAAATGCTTTATGTGTGCAAAAACTTGTACTGAACTATCGGAATTAAAGACACATGTTATGTATGACCATAAAGAACCTTATGTATGTCCACATTGCAATgcaacattttcaaaaataatagattttggTAATCATACTAAAACTCATCACCCCGAAGTTGAAGGACAGTCTGTGTTAGATGTTTTGGAAGCTTTTTCTAAATTAGTTAAAGCTTGGAAATGTGAAGATTGCGATTTACAATTTCACGAAGCTGATAAACTGGCGTTACATAAGATAGAAAAACATAGTGTTGATTTAAAAGTTGAACCTCAGTTCCAATGTATAGATTGTCGTAGAGTGTATGTAACTCTGAAAGGTTTAATGTCACATAGAAGGATCCATCATATTACAGATAACATGGAAGATTCTGGAATGCACGAAAAAGGTGTTCTCTGTATAGAATGTAGAAAAGTTTGTAGAGATATGGACGCATTAACATCTCATATGCGATTACATTCTCCGGAAAGAAAGTACAGATGTAAATTTTGCGATTTTAGATTCGCGTCGCCTCAAAAGAGGAAAGCACATGCGGAATTACACACGGGAGATATGAAATATGTATGTTTCATTTGTGAATACAGATGCACTTCGGTGAATCGATTGAAGCAACATAAAAAGTCTGCGAAACATTTAAGCATGAAAGATTTCTTGTCGACTGGCAAAACTAAAGGCGTTCAACAATCGACttctaaaaatgtatattcagAAAGAGAGGAATGGATGGTGGTGAACGGTGAAAATGATGACAGTGGTGATGATAGTTCGAACGCTGGTGGTGAGGTAACTTGTGATATTTGCGGTCAAACTTTCAACTCGACGTCTAAAATGTTGAAGCACCAAGAAACGCAtccttttattgaaatacccaACGAAGATAAACCAAcaaggatattttttaaataa
- Protein Sequence
- MSSENLQNTYYNQDINGTIIKQENTDYIEVKSEVIENESEIFDNVQIKKEYIPTENDKTQEINSEDTNTAMLNICMENSKNVVNEVTNIYDDSIDIKQENDILEGNDYDEHSMDSNEAKALHNVEVCLQDGIKVKVENETHEENQNYILDDVTIKNELETVTETDLISNEIINTTAISNQLGLTNSQTGTLFMEILPMDIDSRVPLGKVCNPEEILPTYHDNDAIDYADSFQLNSITSTMMTLEQEACELLETKKVDKNYTCSKCLKTFRNSPYLLKKHEKYHKAMESRELSKAKKLKLKLNPDLVKKEQKSLAQTRSQPRANVKEGYECTCGKVYQRKTRLESCLRSHNTEKDIDPCLWCGTCCKQFKDKEELLLHRKRMHRKAMIPCKFCPTDYKNRKELFKHLQIHQKVQVMEYKVLSEVVKGKQKLKCFMCAKTCTELSELKTHVMYDHKEPYVCPHCNATFSKIIDFGNHTKTHHPEVEGQSVLDVLEAFSKLVKAWKCEDCDLQFHEADKLALHKIEKHSVDLKVEPQFQCIDCRRVYVTLKGLMSHRRIHHITDNMEDSGMHEKGVLCIECRKVCRDMDALTSHMRLHSPERKYRCKFCDFRFASPQKRKAHAELHTGDMKYVCFICEYRCTSVNRLKQHKKSAKHLSMKDFLSTGKTKGVQQSTSKNVYSEREEWMVVNGENDDSGDDSSNAGGEVTCDICGQTFNSTSKMLKHQETHPFIEIPNEDKPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -