Pdem018130.1
Basic Information
- Insect
- Papilio demoleus
- Gene Symbol
- -
- Assembly
- GCA_029286655.1
- Location
- JAGSMY010000023.1:6426138-6438165[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.62 60 4.9 0.1 2 23 235 256 234 256 0.89 2 17 0.0023 0.22 12.6 0.1 1 23 266 289 266 289 0.95 3 17 0.024 2.3 9.4 1.0 2 21 413 432 412 433 0.93 4 17 0.027 2.6 9.2 3.8 2 23 497 518 496 518 0.95 5 17 2.1 2e+02 3.3 1.6 1 23 530 554 530 555 0.89 6 17 2.5e-05 0.0024 18.8 0.3 2 23 561 584 560 584 0.97 7 17 0.053 5.1 8.3 0.2 1 23 590 612 590 612 0.93 8 17 0.0012 0.11 13.5 4.1 1 23 618 640 618 640 0.98 9 17 1.1 1.1e+02 4.2 0.0 2 20 651 669 650 671 0.86 10 17 0.08 7.8 7.7 0.3 1 23 743 765 743 765 0.96 11 17 1.6 1.5e+02 3.7 7.2 1 23 772 794 772 794 0.95 12 17 0.001 0.1 13.7 1.8 1 23 835 858 835 858 0.95 13 17 0.00072 0.07 14.2 0.8 1 23 865 888 865 888 0.98 14 17 0.047 4.5 8.5 0.1 2 23 910 932 909 932 0.95 15 17 5.3e-05 0.0051 17.7 1.0 2 23 958 980 957 980 0.94 16 17 0.0014 0.14 13.2 0.2 1 23 994 1016 994 1016 0.96 17 17 0.00011 0.011 16.7 0.7 3 23 1077 1098 1075 1098 0.95
Sequence Information
- Coding Sequence
- ATGGAACCGCAGCTTCCACCATTACTACTTTGTATGGAGAATATGAATGGAGAAGAAGTGTCACTTAGTATTGGACCTAATGATGATTTCCAAACATTCCTGGATAAAGCCAAATCTACCCTAGGTTTCGACGTAGACATTAACTCGATAACTGGCGACCAATCCGTGTCACTCAATGAAAACATATatcattatcttttaaattccgAACTCAATTATCAAACTGATCCACAATTAGGTGCTGAAAGTTTTCAACGTACACCAGAACAGGGTGCACATAGTCCAGATGGGTTTGTCTACGTTTTAGATGACGGTACACAAATACGAGCGTCCCAAATACACTTTGATAATGAAGATCCCCCTGTAGATCTTACAGCAGAACAAATACCATTCGTCAAATACGCAAACGATAGTGCTGATGAAATTGAACCCGAAGATCAAAGTGTTgagaatactaaaaaaataaacatcgtCGAAAGTCCTGTTAAACGTTGGGAAAGTAGAAATTCCAGTCCTAGATCTTCGGATGACGTTATTATTGTGAAAGACGAGAAGAAGGACAGTTCAAGTGATGTTGAAATAATAGAGAACGAACCTGATATCGACGAtcatattattgataatttggAAGAAGCTGATGAGGATGTTAAGGAATTTTTGGGAAAATATCATTGTGATGATAATATTGACATTAAGGAATTAAAGTGCAGGTTTTGCGACCGAATTTTCGAAGAAATCAGCCAAATGATAGATCATGGTGAGGAGCACAAACATAATTTGGAGGATGGAGAAGTATTCCCTTGTCCATTGTGCGATTACGgatattcaaattttaaatggttAAAAGGACATCTCAAAGCAGCTCATGATAAGTCAAAGGTTACTGAAATAAAAGACGAAACAGATAACGAAGGAGACAAGGatgTGGCTAAAACATCTCCATCTTCGTCACCAGTGGCCAAAAGAACTAGGAGTGCAATAAAAAAGGTTGAAACGGAAAACGAAAAAGcGTCTCCAGAGAAGATAGAAcgaacaaataatattacaacgAAACTTGAGTCGAACGGATCAACGTTGACTGTGAATACGGAGGTGAAGCAAGAGTGTCTGGACAGCAGTGATGATGAGGCGATCTGGATCGTACAGACTGTGGGTAGTGAGTCCTCCGAGCAATTGGAGAATTTGCTGAAGGTCGCCACGGGCGAAGACAAAGAGgataaaaatagaaagaaaaataaatgtaacaactGCAGTCAAATATTCCCAACTGCGGAGAGTCTAATCTCCCATAAGTGTCGTCGTCGAGGACGTAAGCGCAGGGGCCCGACTAAAGATGACTCTGTCTTACTCGTCCCCTCTGAAGAAGACTTTCTTAGGAGAGCTCAAGGAAGACCTAAACAAAAGCAGCCAGGTGTTGACAATGATTTATTAGTGGTtAGACCTCGCAAAAGGAAGAACCGTGAGCCGACTTCTGACCCTCAAATCGTGACCTGCCACAATTGTAACGAATCCTTTACATCCAAAGTTAGACTAAAGTTTCACATGCAATTCCATGACGCGACTAACCTTTTGACCGCCGAGGGTCAATACGCGTGTCCGGAATGCGAGGGCGCGCATTTTCCAACTGAGAGCGAGCTCTTTGACCACGTACATTTCCAGCACCATAAGCAGAAACGCTGGCAATGCCCTGTTGAAGATTGTGGCAAGACTTTCTACCTCAGGGCCACGCTAACGAAGCACAGTCGGACGCATACAGACACGCGGCGTTACGTGTGCGTTACGTGCGGGAAACGATTCCTTGATAAACAGACTCTCGATGAGCATGGAGTTACACATCTACAGataaagcCGTTCCAGTGCCACATTTGCTTTAAGCAGCTGACGCGTCGTTCACGTCTGCGCATGCACCTTCGAGCCCATGAAGAAGAACTTGCGCCTCGGCTTGTGCTCGTTTGCGCAGCATGCGGCCGCGCCTTCCGCGACACTAATGACGCTCAGGACCACGCTAATAAATCAAAAGAGTGTATAGAACAGTTAAGTCCGGCTGTTAAAGAAGAGAACGAAGTCTCAGTGCTCCTCTCTCCAACCACTGGACTGGTATCACATACAGTAGCTGTTGTTGCTAAATCTCCGCAAATGGAGTGCGGGCCGGAGGGCGATGCGTTGTTGGCAACACTCACAGACTTCGCAAAGATCATCATACGAGTGGTAGAGATTGAGAAGGCCTTCCGCTGCGAATATTGCGAAGAtgttttttatttagaagaaTCGCTAAATAGTCACAGAGTTATTCACAAAGGTGTTAAGAATCCATTTACATGTCACATCTGTAAAGTCAGCTTCGCTACGTATTCCAGATGTACCACACATAAAACAACTCATGGTTTCTATAAGCGCTCATTAGCTGATTGCAAGAAAGCAGCCAAGTGTCCCGGCTCCTCTGAAGCCGGGCCCGCCGCTACAGGGATTTTAGGTTATGGAGGATTCCCTGttgttaaacatttcttaTGCGAGGATTGTGGTCGGTCGTATCTGCACTGGACGTACCTTCAGGTACATCGGCGAATGAAACACGCGAACGAGAATTTTCTATACAAGTGTAACCAGTGTGATCTCACATTCCCTAACAGTTGGAGTGTAGCGTACCATAGAAAGAAGATGCACGGCAAGAGTGGGCCTGAGGACGGCGGCGGCACCACCAAGATCGCTAGAGATGATTAtagGATACCATGTCGAGATTGCAGCATGGTGCTGCCAAATAAAACAGCACTTTACGCCCATAGACAGAAAGAGCATAGTGATTTGACTCTTTCTATGAGCGATGAACAAAGTGCAGAGGCGCAAGTGCGCACGCACGCGCCGCTGGCGACTTCTTGCAGTAAATGCGGACATAACTTTAGCGAGCCCAGCGCTCTTCAGCGACATCTTaaAGAGGTGCATGGTCATGAGGGGGAGATTCGTGGTGAACGTGGCAGGTCGCATGCATGTGCGGTGTGCGGGCGTGCTTTCCGCTCCGCTTCTGTGCGTAATGAGCATCTCCGTGTGCACACCGGAGAGCGACCTTACCCTTGTGATGTGTGCGGGGTGCTTTCCGCTCCGCTTCTGTGCGTAATGAGCATCTCCGTGTGCACACCGGAGAGCGACCTTACCCTTGTGATGTGTGCGGGGTTGCATTCCGACGCGATGCGTAACCATCGCTTGATCCACTCCGGTGTGCGCGCTTGGGCGTGCGCGCGCTGCCCCAAGCGGTTCCGGATACGATCCGACCTGCGTACACACATGCGGCTTAAACATCCCACTTATATGATTGTTTTCGAGATGAAAGGTTTAAATCCGAGTTATGAAGAGATAATGCAACACATCCGCGATAACAACATCACTCACGGTCGCATTATAGAGATCACAAAGATGTCCTTCGAAAAGGGTACAAGCAGTATAGTGCCTACAACAGCGCGCGCCCTCTCTCTGTTGGGTCACATGCCTCGTACTAAGATCACTTGTGAGCCCCCCACCCCGGTTAACATCGACATGTTCCAACCAGCACGTCGCGGCCGGGGCATTGCAAAGAACCCTAGAAGACCAAAGATCTTACAAGGACCGCACGGAGAATCGGAGCTAGACCCTACTGCGTATTCTGTTCCTATCACATGCGGCACCAGTGGCCAGGATTTGCCAGAACTGAACGTGGAACTGTTAAGCGAAACAGCGCTGCACAGCGGTCAAGTGGTGCAGATTCAGCTAGACGATAACATATGGAATAAAACGCAATGA
- Protein Sequence
- MEPQLPPLLLCMENMNGEEVSLSIGPNDDFQTFLDKAKSTLGFDVDINSITGDQSVSLNENIYHYLLNSELNYQTDPQLGAESFQRTPEQGAHSPDGFVYVLDDGTQIRASQIHFDNEDPPVDLTAEQIPFVKYANDSADEIEPEDQSVENTKKINIVESPVKRWESRNSSPRSSDDVIIVKDEKKDSSSDVEIIENEPDIDDHIIDNLEEADEDVKEFLGKYHCDDNIDIKELKCRFCDRIFEEISQMIDHGEEHKHNLEDGEVFPCPLCDYGYSNFKWLKGHLKAAHDKSKVTEIKDETDNEGDKDVAKTSPSSSPVAKRTRSAIKKVETENEKASPEKIERTNNITTKLESNGSTLTVNTEVKQECLDSSDDEAIWIVQTVGSESSEQLENLLKVATGEDKEDKNRKKNKCNNCSQIFPTAESLISHKCRRRGRKRRGPTKDDSVLLVPSEEDFLRRAQGRPKQKQPGVDNDLLVVRPRKRKNREPTSDPQIVTCHNCNESFTSKVRLKFHMQFHDATNLLTAEGQYACPECEGAHFPTESELFDHVHFQHHKQKRWQCPVEDCGKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICFKQLTRRSRLRMHLRAHEEELAPRLVLVCAACGRAFRDTNDAQDHANKSKECIEQLSPAVKEENEVSVLLSPTTGLVSHTVAVVAKSPQMECGPEGDALLATLTDFAKIIIRVVEIEKAFRCEYCEDVFYLEESLNSHRVIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADCKKAAKCPGSSEAGPAATGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCDLTFPNSWSVAYHRKKMHGKSGPEDGGGTTKIARDDYRIPCRDCSMVLPNKTALYAHRQKEHSDLTLSMSDEQSAEAQVRTHAPLATSCSKCGHNFSEPSALQRHLKEVHGHEGEIRGERGRSHACAVCGRAFRSASVRNEHLRVHTGERPYPCDVCGVLSAPLLCVMSISVCTPESDLTLVMCAGLHSDAMRNHRLIHSGVRAWACARCPKRFRIRSDLRTHMRLKHPTYMIVFEMKGLNPSYEEIMQHIRDNNITHGRIIEITKMSFEKGTSSIVPTTARALSLLGHMPRTKITCEPPTPVNIDMFQPARRGRGIAKNPRRPKILQGPHGESELDPTAYSVPITCGTSGQDLPELNVELLSETALHSGQVVQIQLDDNIWNKTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -