Pdem000748.1
Basic Information
- Insect
- Papilio demoleus
- Gene Symbol
- Bcl11a
- Assembly
- GCA_029286655.1
- Location
- JAGSMY010000001.1:9411064-9416244[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.1 3e+02 2.7 6.4 1 21 100 120 100 122 0.94 2 11 0.00022 0.022 15.8 1.6 1 23 128 150 128 150 0.98 3 11 4.1e-06 0.0004 21.2 1.2 1 23 156 179 156 179 0.97 4 11 0.005 0.48 11.5 3.3 1 21 185 205 185 207 0.95 5 11 0.00014 0.014 16.4 4.3 1 23 213 235 213 235 0.99 6 11 3.6e-06 0.00035 21.4 0.9 1 23 241 263 241 263 0.98 7 11 0.001 0.099 13.7 1.5 1 23 271 294 271 294 0.96 8 11 0.00016 0.016 16.2 3.6 1 23 301 323 301 323 0.97 9 11 0.017 1.7 9.8 0.7 1 23 329 351 329 351 0.96 10 11 6.9e-05 0.0066 17.4 3.6 1 23 357 380 357 380 0.93 11 11 8.9e-06 0.00086 20.2 1.6 3 23 396 416 394 416 0.94
Sequence Information
- Coding Sequence
- ATGACTACCAAAGAAACACTAGAGGTAACGcataaacaagaaatagagGTACAACATATTGAGATATTAGAAAACGATAGTGGTAATTATGAAGAAGTTACAATGATaccattacaaaatatatcagaagatataaaatatgtaattgttGTTCAAGAAgataacaaacaaattaacGATGCTGTTCAGgatgaaaatataaaagtttacgaTTTTGTTGAAACTGAAAATTTTAAGTCAGACAATAATAACACCCAAGTTAACGAGAAAAAGTCCACGAAGCGTTTCCGAGGAAATTTTCAGTGCAGGTTCTGTTCTTACACTGCACATCGACGATATTTGCTTATGAGACATGTGAAATGTCATTCGGAGAGTCGCGAGCATAAATGCGAGGTGTGCGCGCGCGGATTCAAGACTGTCGTCTCGCTGCGCAACCACACCAACACACATTACGGCCTTAAAccttatatttgtaaatactgCAATAATTCGTACACAACCTCAGGAGAGTTAATAAGGCACATTAGATATAAGCATACACATGAAAAGCCACACAAATGCAACGAGTGTGACTACGCTTCCGTAGAACTGTCAAAACTTCGCCGTCACATACGATGTCACACTGGAGAACGGCCCTATCAGTGTCAGCACTGCACGTATGCTTCCGTGGACACTTTCAAGTTAAAACGTCACATGCGAACACACACAGGTGAAAAACCTTACAAGTGTGAAGAATGCAACATGCAATTCACACAATCAAATTCATTGAAGGCACATAGACTAATACATAACGTAACCGAGAAGCCGGTGTTCGCATGTGAGGTGTGTTCCACCAAGTGTGGCCGTAAAACCGACCTGCGCATACATATACAGAAGTTACACACCTCCGCTGAACAGCCGTTCACATGCAAAATATGTGGCCAAATGTTCTCCGATCGTTACTCTTGGAAAATTCATTGTAAGACGCACAAAGGCGAGAAATGCTACAAGTGTGAGCTGTGTCAATTCGCAACGAGCTCGATGTCGCGGCTCAAGACGCACGCGCTGCTGCACGCGGACCACAAGCCCTTCGCCTGCCAACACTGTGACCAACGCTTCAGACAGAAACAGCTGCTAAGACGACATGAGAATCTATACCATAAACCGGGTTATGTACCTTCACCATCAAAAGAGAAGATTCATTTGTGTAAGCAATGTGGCCGATCCTTTGCCTATCCGGGCAACTTGAGCCGCCATCTTAATTTTCACGAATCAAAACCTTCACTCTCTGATGTTATGATTCCTGGCCGTATTAAAGAGAATCAATGTCTCAGAGAACagacaaaggtaaaggatgaagtttttaataattcaattagaATAAACAATATGGAGAGTgacgataaaataaatttctacgATACAGAAACAgagtcatattttataatagaagtCATCAACTGTACTGATTCGAACTCAAATGAAAATCCCAACAAATATATTGGAGATAATTTACAAGATGAAGAAGAGATGATGTTTACAGAGGATGTAAAGGATAATGATATGGGCATGTATGTGTCGGATTTGaagtatgaaaatatttacgttgAACAATAA
- Protein Sequence
- MTTKETLEVTHKQEIEVQHIEILENDSGNYEEVTMIPLQNISEDIKYVIVVQEDNKQINDAVQDENIKVYDFVETENFKSDNNNTQVNEKKSTKRFRGNFQCRFCSYTAHRRYLLMRHVKCHSESREHKCEVCARGFKTVVSLRNHTNTHYGLKPYICKYCNNSYTTSGELIRHIRYKHTHEKPHKCNECDYASVELSKLRRHIRCHTGERPYQCQHCTYASVDTFKLKRHMRTHTGEKPYKCEECNMQFTQSNSLKAHRLIHNVTEKPVFACEVCSTKCGRKTDLRIHIQKLHTSAEQPFTCKICGQMFSDRYSWKIHCKTHKGEKCYKCELCQFATSSMSRLKTHALLHADHKPFACQHCDQRFRQKQLLRRHENLYHKPGYVPSPSKEKIHLCKQCGRSFAYPGNLSRHLNFHESKPSLSDVMIPGRIKENQCLREQTKVKDEVFNNSIRINNMESDDKINFYDTETESYFIIEVINCTDSNSNENPNKYIGDNLQDEEEMMFTEDVKDNDMGMYVSDLKYENIYVEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -