Pdem013343.2
Basic Information
- Insect
- Papilio demoleus
- Gene Symbol
- -
- Assembly
- GCA_029286655.1
- Location
- JAGSMY010000017.1:5392050-5398691[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00011 0.011 16.7 0.6 2 23 321 343 320 343 0.95 2 12 2 1.9e+02 3.3 0.2 5 23 352 370 351 370 0.93 3 12 0.0047 0.46 11.6 4.4 1 19 404 422 404 427 0.94 4 12 0.21 20 6.4 0.2 5 23 436 454 434 454 0.94 5 12 0.015 1.5 10.0 0.2 3 23 462 482 460 482 0.96 6 12 0.0002 0.02 15.9 5.6 1 23 490 512 490 512 0.97 7 12 0.00023 0.022 15.8 0.6 1 23 521 544 521 544 0.97 8 12 0.00024 0.023 15.7 0.2 1 23 550 572 550 572 0.97 9 12 1.2e-06 0.00011 22.9 2.7 1 23 578 600 578 600 0.98 10 12 0.0011 0.11 13.5 0.6 1 23 605 627 605 627 0.97 11 12 3e-06 0.0003 21.6 4.0 1 23 633 655 633 655 0.97 12 12 0.00025 0.024 15.6 2.1 2 23 662 684 661 684 0.95
Sequence Information
- Coding Sequence
- ATGGCGATGAATTTTGAAGCATTATGTCGACTTTGCGCAAAGGAAGACGAATTTACAAAAGACTTGCTACACGAAAGCAACCAGAATCTCCTTAAATTAATCAAGGAATTTGTACATATTGTTATCAGTGATAACGACGAATTACCTACAAAAATATGCCTAAACTGCGAAGAAAAAATGGTAGAATTtcagttgtttgttttagaatgttttaaagttCAGAACACATTAAAAGACATTCATAGGAATCtcaatataaaacaagaaCATGTAGAAGTCATTATTAATCCAACCATTAAGTCTGAGGTCAAAGATGAACTAATGCCAGAAGACATAGTAAgTGTTATAAATCTTGGGCCGTCATTAGCAGAAATGGCTGGAGTCACtcttgaaaatgaaaatgatgaggatgataataaagaagaaaagtataattttgatCATGATGACGATGACGATGACTACCACACAaatgatgatgacgacgatgatgatgacgatgatctGGAGGATATTTCTATAGCAgaattgaaacaaaagaaaaagaaacgTGTTATAAATCTTGGGCCGTCATTAGCAGAAATGGCTGGAGTCACtcttgaaaatgaaaatgatgaggatgataataaagaagaaaagtataattttgatCATGATGACGATGACGATGACTACCACACAaatgatgatgacgacgatgatgatgacgacgatgatgatgacgacgatgatgatgacgacgatgatgatgacgacgatgatgatgacgacgatgatgatgacgacgatgatgatgacgacgatgatgatgacgatgatctGGAGGATATTTCTATAGCAgaattgaaacaaaagaaaaagaaacgtataaaaagaaaatctttaaCGGAAGAAGAAGCaattgaatttcaaaaagtACTACAAAAGTCAAATATTCAAGTTAAAGACATAGTTAAATTAAAATGTGATGAGTGTAAAGAATCATTCAAGTCTTGGAGCGCTCTCGGAATGCACTACTCGAAGCGCCACAAGAGCAAACCGCTCGTATTCTGCATCTGTGGCTTCGTGATCCGGTCCAAAAGCGTGCTCTACAAACATGTCTCCGATCACAAAATAGAAAGTAGGAAATATAGAACGGCCACAGATTCGGACGGGGACAAGCTGGACGATTCCAAGTATTCGAGCCTTAatgttaaagattttattaattttgtatgcAATAATTGTAACAAAGAATGTACGAGTTGGTACACTCTGAAGGCGCACTGCGAGCAGGAACACGAATCATTGCCTTTCGTTAAGTGCATCTGCGGGATAACGGTTAAATCTAAATCTGTTTTGTATAAACATGTTCAAGATCATAAAAATCCCAATTTCCTAGCCTGCGATAAATGTCCGAGGATAGCAAAAACGATAGAGGCACTGACGAAACATAAAATGCGACACGTACCAAAATCTGAGCGTCGTTTCTGCTGCAGCACCTGCAACAAATCCTTCAACAGCCGCGAGACTCTCAAATCTCACGAGAAGTCGCACATACCCATAGAAGAGAGGAAGGTATTCCGATGTGAACTCTGCGACCTTAAGTTCACGACGCGGTCGTCGGCGGCCTCGCACAAGCGCGTGGTGCACGACAAGATCAAGAGCTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGCGAGTTGCGGCAGCACCGCGCCATACACAGCGACGACAAACCCTTCGTCTGCCGCAAGTGCTCCAAGCCCTTTAAGACGTACTCCAACCTGAAGACTCACATGGACACGCACGAGGAGACGTCGTACGCGTGCTACGTGTGCAGCCGCGTGCTCAACAGCCGGCGCACGCTGCGCAAGCACCTGCTCGTGCACGAGGACAAGTGCCGACACGTCTGCTCCTACTGCAACAAGGCCTTCAAGCGCAAACAGACTTTAAAGGTGCACATGTACATGCACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGACGAGAGGTTCGCGTACGCGTCTACACTGCGTTCTCATCGCCTACGCTGCCACGCCGACAAGATGGCGCCCGCCCACACTGCGCACAACGTCGGACATGCGCAGGCGCACGCCCCCGTCCCCGCACCTCTGCCCGCGCACACGCACGCGCACGCGCCCTCCTACGACGTGCTCGCGCACGCTGTACatcaaggttttataaaaaacgacACAACAGGGGGTGTACCTAAGAATGAAGTGGAGGCtatctaa
- Protein Sequence
- MAMNFEALCRLCAKEDEFTKDLLHESNQNLLKLIKEFVHIVISDNDELPTKICLNCEEKMVEFQLFVLECFKVQNTLKDIHRNLNIKQEHVEVIINPTIKSEVKDELMPEDIVSVINLGPSLAEMAGVTLENENDEDDNKEEKYNFDHDDDDDDYHTNDDDDDDDDDDLEDISIAELKQKKKKRVINLGPSLAEMAGVTLENENDEDDNKEEKYNFDHDDDDDDYHTNDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDLEDISIAELKQKKKKRIKRKSLTEEEAIEFQKVLQKSNIQVKDIVKLKCDECKESFKSWSALGMHYSKRHKSKPLVFCICGFVIRSKSVLYKHVSDHKIESRKYRTATDSDGDKLDDSKYSSLNVKDFINFVCNNCNKECTSWYTLKAHCEQEHESLPFVKCICGITVKSKSVLYKHVQDHKNPNFLACDKCPRIAKTIEALTKHKMRHVPKSERRFCCSTCNKSFNSRETLKSHEKSHIPIEERKVFRCELCDLKFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKPFKTYSNLKTHMDTHEETSYACYVCSRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRKQTLKVHMYMHTGDKPLTCKWCDERFAYASTLRSHRLRCHADKMAPAHTAHNVGHAQAHAPVPAPLPAHTHAHAPSYDVLAHAVHQGFIKNDTTGGVPKNEVEAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -