Pdem021556.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio demoleus
Gene Symbol
-
Assembly
GCA_029286655.1
Location
JAGSMY010000036.1:634632-649040[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.18 17 6.7 0.2 1 23 475 497 475 497 0.95
2 11 9.8e-05 0.0095 16.9 4.6 1 23 509 531 509 531 0.97
3 11 2.2e-05 0.0022 18.9 2.3 1 23 537 559 537 559 0.98
4 11 1.4e-05 0.0014 19.5 2.4 1 23 566 588 566 588 0.99
5 11 0.0012 0.11 13.5 0.1 1 23 594 616 594 616 0.92
6 11 2.4e-05 0.0023 18.8 0.1 1 23 622 644 622 644 0.98
7 11 5.2e-06 0.0005 20.9 2.0 1 23 650 673 650 673 0.96
8 11 0.0044 0.42 11.7 3.9 1 23 679 702 679 702 0.92
9 11 6.8e-06 0.00066 20.5 1.4 2 23 709 730 708 730 0.97
10 11 3e-06 0.00029 21.7 1.0 1 23 736 758 736 758 0.97
11 11 0.023 2.2 9.4 1.0 1 22 764 785 764 788 0.92

Sequence Information

Coding Sequence
ATGAATcaatactgttttatttgtaattcaaGAGCTGGAATTTCCTTACGAAATGCTGTTAATATATTTGGAGAAAATAGTTTACAACAATCGGGGAAATCGATGGTTAATATTCTAAGTGAAATTTTGGAAAAACCGgtaaaagagaaaaatatacattcgAAGATTCTTTGTAGTAAATGTCATAAAACTTGCGTAGAATATGATTCAATACAAATCAGATTGCAAGTAATAAAATCATCAATGATAACACAATTCCAAAGAACATTACCTCGACATAATCTTGATTATGatacttataataaagaaCCCAGTCCTCAGAAGTTTAGTGGAAAAAAAATCGTCCTACCCGCTTCTAAGTTGCAACCGTTGCCATCCGACTTTGTACTTAAAGGAGGGAAATTGGGAAATACACCTTTAGCAAATTTTGcttccaaattaaataatCCAGAAATAAGAATACTCTCGCCATCaacgttaaatttaaaagtgacaGTCGGCTCGTCCGTCCTCACGCAGAGCATAAAGACGGGTGTGTCCAAACGCAACGCCGTCACTTCATCCGTCACGTCAGTCACGTCAGTCGCGTCATCGGTGACGTCAACGTTCTCAAACACGCAGACAAACCCAGTGTTAAGTTTCTCTTTAGATGAACCTCCTAAAGACATCTTCTCAACAGAATTGAATCAAAGTTCACCAAAACGTGAGGAGAATGTTGGTGACGTGAATGATGACCAGCCCATGGAGATTGATGAAGcTTGTTCTTTAGCAGTTATAACGAGTACAGCAAATGATGGTAAATTAACGTTTGAAGATATTGCAGAtaagaACGATGGTGAAAAACGAAAGTCATTCTTTGACGTGGACTTGTTGTCGAGTCTGGACTCACCCgcgggggagggggagggcaAGTACGTGCTGGGGAAGCTGCACATGATGCAAggggatgatgatgatgatgatgaacaACcTACTTTAGTAATGGGGGGAGAGAAGGGGTCAATAATCCGCGTGATGTCGGGACAGCCGTATGTGTGCGGGACAGGGGAGATATCACTGGTGCTACCTGACGGAGACATGGAAGAGCAGGATACACAAGATTCCAACGACGAGTCTCAGTTCGAGCTCCACGTGTCAGGAGATGAGGAGACAGCTAACGCTATCATTGCGGCTGCGCAAGAACAGGggggtgcttttataaaagtagAATCAGGAGAGATGTACAGAGTTGAATCGGTACAGAGTAAAACTGACGAAGAAGTGTCCGGTGAAGACGACGCTATGCTGTTAGACATAGTCGCGCGGGAAAATGGAAAATTCAAATGTTTGATTTGTGAAAGAAATGATTCAGAGAGTGCGCAGTGCGTGGGGTCCGCGGCGAGCATGTCGCAACACATGCGCAGTGCGCACGGCGCCAGGATACACATCTGCGCACTCTGCGGACTCATACTGCGCAAAAAGGCAGACTACCTCGCGCACCTCGgTAAACATAAAAACCTCGTACATACAGACAAAACTAAAACACACGAGTGTAACATCTGccagaaaaaatataaTTCGAAGTCCACATTGTCTGAGCACATGCACGTGCACACCGGCACGAAGCCGCACACCTGCGCCGTGTGCGTGAAGAGTTTCGCCTCCAAGTACACGCTGCAGTCACATCTAAAAACACATCtcGACAGGCCGCGTCCCTTCAAGTGCAGTCAGTGCGGGAAGTCATTCCTCACTCAGCAGAATCTAAACCAACACGAGAAAACTCACTCCGGAGTCAAGGAGTTCATATGTAAAGTTTgtggTAAGGCATTCGGCGCACTGCACAACCTGGAGGTGCACGGCGTGGTGCACTCCGGCAACAAACCATTCGTCTGCGGAGTCTGCTCAAAGGGCTTCGCGCGCAGAGCAGAGGTCAGGGACCACATGAGAATACACACCGGCGAGCGTCCGTTCTCGTGCGAGGAGTGCGGGGCGCGGTTCACGCAGCGCTCCAACCTGCACTCGCACCGCCGCGCCACACACCTCGACGACAAGAGACACGCCTGCCATCTCTGTCCCAAGAAGTTCAAGAGGAGACGTTTGCTGGACTACCACGTGAAGGCGTCCCACACTGGCGAGCGGCCGCTGCAGTGCACCGTCTGCCAGGCCTCCTTCGTCTACCCCGAACACTTCAAGAAGCACATGAGGATACACAGCGGGGAGAAACCTTACAGCTGCGAGGTTTGCGGTCGTCAGTTCAACACACGCGACAATCTGAACACGCACCGCTACGTGCACAGCGACAAGAAGCCGTACGAATGCGTCGTCTGCTCCGCCGGGTACATGCGCAAGCAACAGCTCTATCACCACATGAAGAACACCGGCCATCTAGCAGAGTCCATAGTAGTGAACCAGCCCCGGATACTGAAGGTGCCGCAAAATGTGGTGACGTCAGCGGGCACCATCATCATAGACCCAGGAAAGGAGGAACCTACTTCCAATATAAGAAGTTCTGAActCTTTGACGAGGATATCGACAAAACAATAGAAAACTCAACTCTGGATATAGTTCAAAGTAACGAAGATCAACCATTAATTACTTTacATAATATATCTACTGAAAAAGAAGATGGTTCAATATTGGACACAGTCTCTGAAGAACAAACCGCGcaaataacAGTAGATCAATCAACAAATGCGAACGTCACAAGACTCATACAATTTCAATTACCCGATGGGACAAGTGGATGGCTCgctgtatga
Protein Sequence
MNQYCFICNSRAGISLRNAVNIFGENSLQQSGKSMVNILSEILEKPVKEKNIHSKILCSKCHKTCVEYDSIQIRLQVIKSSMITQFQRTLPRHNLDYDTYNKEPSPQKFSGKKIVLPASKLQPLPSDFVLKGGKLGNTPLANFASKLNNPEIRILSPSTLNLKVTVGSSVLTQSIKTGVSKRNAVTSSVTSVTSVASSVTSTFSNTQTNPVLSFSLDEPPKDIFSTELNQSSPKREENVGDVNDDQPMEIDEACSLAVITSTANDGKLTFEDIADKNDGEKRKSFFDVDLLSSLDSPAGEGEGKYVLGKLHMMQGDDDDDDEQPTLVMGGEKGSIIRVMSGQPYVCGTGEISLVLPDGDMEEQDTQDSNDESQFELHVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVESVQSKTDEEVSGEDDAMLLDIVARENGKFKCLICERNDSESAQCVGSAASMSQHMRSAHGARIHICALCGLILRKKADYLAHLGKHKNLVHTDKTKTHECNICQKKYNSKSTLSEHMHVHTGTKPHTCAVCVKSFASKYTLQSHLKTHLDRPRPFKCSQCGKSFLTQQNLNQHEKTHSGVKEFICKVCGKAFGALHNLEVHGVVHSGNKPFVCGVCSKGFARRAEVRDHMRIHTGERPFSCEECGARFTQRSNLHSHRRATHLDDKRHACHLCPKKFKRRRLLDYHVKASHTGERPLQCTVCQASFVYPEHFKKHMRIHSGEKPYSCEVCGRQFNTRDNLNTHRYVHSDKKPYECVVCSAGYMRKQQLYHHMKNTGHLAESIVVNQPRILKVPQNVVTSAGTIIIDPGKEEPTSNIRSSELFDEDIDKTIENSTLDIVQSNEDQPLITLHNISTEKEDGSILDTVSEEQTAQITVDQSTNANVTRLIQFQLPDGTSGWLAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01149782;
90% Identity
-
80% Identity
-