Pdem008725.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio demoleus
Gene Symbol
-
Assembly
GCA_029286655.1
Location
JAGSMY010000012.1:1760400-1766398[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.00012 0.011 16.6 0.1 1 23 202 224 202 224 0.98
2 29 0.00061 0.059 14.4 1.0 2 22 256 276 255 276 0.93
3 29 2.5e-05 0.0025 18.7 0.4 3 23 307 328 305 328 0.96
4 29 0.0091 0.88 10.7 1.4 1 23 379 402 379 402 0.97
5 29 0.016 1.5 10.0 0.1 1 23 421 443 421 443 0.96
6 29 0.00045 0.044 14.8 2.7 2 23 482 503 481 503 0.97
7 29 2.1e-05 0.0021 19.0 2.0 2 23 542 564 542 564 0.97
8 29 5.8e-05 0.0056 17.6 1.5 1 23 614 637 614 637 0.97
9 29 0.0013 0.13 13.3 0.2 2 23 694 715 693 715 0.96
10 29 0.012 1.2 10.3 6.0 2 23 727 748 726 748 0.96
11 29 0.068 6.6 7.9 1.8 2 23 760 781 759 781 0.96
12 29 0.0078 0.76 10.9 0.7 1 23 791 813 791 813 0.97
13 29 0.0089 0.86 10.7 7.6 1 23 839 861 839 861 0.96
14 29 6.3e-06 0.00061 20.6 1.1 1 23 872 894 872 894 0.98
15 29 0.0031 0.3 12.2 1.2 1 23 902 924 902 924 0.95
16 29 0.00071 0.068 14.2 0.2 2 23 944 966 943 966 0.97
17 29 0.4 39 5.5 1.6 1 23 984 1006 984 1006 0.93
18 29 0.29 28 6.0 4.1 1 23 1013 1035 1013 1035 0.97
19 29 0.0075 0.72 11.0 2.7 2 23 1046 1068 1045 1068 0.95
20 29 0.0011 0.1 13.6 0.3 1 23 1090 1112 1090 1112 0.97
21 29 6.6 6.4e+02 1.7 5.9 2 23 1155 1177 1154 1177 0.94
22 29 0.0041 0.4 11.8 0.2 2 23 1193 1214 1192 1214 0.92
23 29 0.025 2.4 9.3 5.1 3 23 1222 1242 1220 1242 0.96
24 29 0.006 0.58 11.3 0.9 2 23 1253 1275 1252 1275 0.95
25 29 2.9 2.8e+02 2.8 5.4 2 23 1292 1310 1292 1310 0.88
26 29 5.9 5.7e+02 1.9 1.1 2 21 1314 1333 1314 1334 0.92
27 29 0.18 17 6.6 0.4 2 23 1383 1404 1382 1404 0.93
28 29 3.6e-05 0.0034 18.3 0.3 2 23 1415 1437 1414 1437 0.97
29 29 3.1 3e+02 2.7 2.8 2 20 1475 1493 1474 1495 0.91

Sequence Information

Coding Sequence
ATGGCCCTCAAGCTCGGAAAATGTAGGCTTTGCCTCAAACTCGGCGACTTTTATTCCATCTTCACGATGGATAACAACCTACAGCTCGCCGATATGGTTATGGAATGCACTCGAGTAAAGatatatgAAGGAGATGGACTACCAGACAAGATTTGTTCAGAATGTATTCAGAAACTCAGCAGTGcacatatatttaaacagCAATGTGAAAGATCAGATCAGGAGTTAAGGCGGAATTATGTCCCTCCACCAGGGTTCAGTGCTGTACCTTCACCTCCAAATAGGCACAGCAGTGACTCCGCATTCTCCAACAACACAGATGTGTCTATAAAGACTCAGCCCACAACATCACCATCTGAAACTAAAGTCTCTTCTGCCAGCCGGAATAGAAAGCGTAGCTCGGAAAGTATCGACAATACGTCATCCAGTGGCCAGTCATATGACTACCAACCCACCTCTACCAAACGAGTGGCAGAACTGCGAGCTGCAGAAAAAAGGCCAAGAAGAACTGTAAACTCGTCTTATGCTGACTCTGATTATGAAGAAAACAGTGGATCCCAGTGTTCTGTTGAAACTGACTCTGATGAACCAACAAAGAGTGAATTCAAATGCAAAGTATGTGGCAAAGAATTTGCCTCAGCAAAAAGTGTGGCGGCGCATTCTAAAGTGCATTTAAGGAAAGGTTACAAGAATGTCATAGTCAACATACCACAATCTATCGAAAACAAAGAAATGGAGAACGCAAATGATATAGAGGATAAGATGTATTGTGAGAAATGTGACAAGAaattcaagttaaaaataatgttaaaacgCCATCAAGAAACATGCGGAAAAGTATTACCAAAGTCACCAATTAAAGAGTTGCAAGTGTCACTTGAGCCAATTGACTCCCCTTCCCCGCAAAATAAGATCAATTGTGATATGTGCTCaaccaaatttaaaacaattgagaATCTGGAAAAACATATGAGAGTGGTTCATGCGGCTGTTCTAAAACGAGATAAACATGAACAAATTGTCGAAAACGGTTCACCTACAGTACCTTGCTATTTCTGTGACCAACCATTCGACGACTATAATGTTTATGTGGAACATTTCGATACATGTTCGGAGAAGCgtgatgttattattttcacttGCCCTCTTTGTCGCAAAGTTTTGTCTAAAACGAGCACTTACTTCcttcacataaaaaatatgcatttgACTGTTAGTGGgaatcaaaaaaaaagtttggaTAAATCTGTGGAAGGATCATTCGAATGTCGCATTTGTAGCAAGAAGATGGCGACGCAAGAGCAGCTGATAAGTCATCTGGCAGGGCATATGTCAAACATGGGCGAGGAGGATATGGCTGAAGGCAATGTATGtGAAAGTCCTACAGACAATGATCCAGATTTAGCAAACTACTCAAATTCTAATGTATCTTCTGGACCTTTGAAATGTAGTATGTGCGAGAAACGATTTACCTACAAGAAAGCTCTGTTTACACATGAACAAAAGCACTTGGATGGAGAAATAGAGGTAAAACAGGAGCCACATGAGACGGATAGCAGTTTACTGAGTGAATCGAACCACCAATCCGAGTCAGAATCAAGCCAAGAAGAGGAAGATGGCAACACGTGCGACATTTGTGATAAGTCTTTTTCTTACAAGCGTCTTCTAATACAGCACAAGAAGACAAAACATAACATGAGCTCCGGCACAAAGCGAGCCAAGATTACTCTCAAAGACTGCAGTGTGAAGTGTCTCATCTGTGACATAGAGATGAAAGTGAGCGCGATAAATGAGCACAACCAGAAACACACAACTGTTAACATAAAGCCACGTAACCTGTACACATGTGCCGAGTGCAATGAGAAGTTTAAGAGCTGTAGCTCACTGGCCACACACATCAAGCTGGTGCACCGACTGAAGCAGCCACAGGCTCCCAAGCTGCAGCGCGCGGACTTGGCGGATTTTTGTGAAGTCGTCGTAACCAAGACGGAACCTCTGGCCTCAGGCCAGGGTTGCGACGACCTTGGGACGGTTCCGACTGTAAACGAATCCGTGCCACTAGTCAATCTGACTGGCCTCACCTGCCCCACCTGCGGAAAGAAAATGCCCACGTTGATCTCACTTAAGAGGCACATCAACTGGCATTCTAATTTTGGGAACAGCCTTGAGAAAAAATTGGAGTGCTTTGTCTGTAAAGAGACATTCCGGTTCCAGTGTCACTACCGGTTGCACATGCGGGAGCATTACAAAGACACCAACCTGGATCCCGCGCTGCTCACCTGCTCCATCTGCAACCGTAAGAGCAAGCACCTCCGTGCCGCGCAGGCGCACATGAACTTCCACAAGCAGACGCGCTTCAAGAACAAGGACTACGAATGCTCCATCTGCAAGAGAGTGTTCCAGTTCCGTAAGGTGTACCTTTCGCACATGGCTATACACTACAAGCGCGGCGAGAGTGCCAATAACACAGTGGTGGGCGTGGAGGCGTCCGCCTCGCGCGCGCTCTCCGAGGGGCACACCTGCCATCACTGCGGCAAGGTGTGCGACTCCGAGGTCTCGCTCAAGCATCATGTTATATGGCACAAGTCCAAGACCTCGCTCTTCGGAGCGCGCCACGAGTGCAACATCTGCGGCATTATGTTCACCAACAAGAGAACGCTGGAGCTGCATGTCCGATCACATTACGAGGATGAGAATGGCCCCTACAAATGTACAATATGCGGCAAAGGATTCATCGACGAAGTTTATCATAGGAAACATGTTAAAGGCCACAATTTTGACCATCAATCACATCAGGCGAGGATAGCTAAGCTCAGAAAAGACAAGGTGAAGTGTCCGATTTGTAGCCGGTTCTATCCCGACGTCGTCAAACTAATCCGCCATCTACGAAGGACGCATCCGGAGAGCAAAATGATAAAGAACGATCCGGATGCGCCAGAACAGACCTACTTCTCATGTAAACTGTGCGCTAAGGTGTTCCTCGACAAGCGAAGGCTGCAGCACCACGAGGAGGCTCATCTAAGGAAACCAGAGTTCTTTAAGTGCAAGTTCTGTGGTAAGAAGACCATGTCACTCAAGAATCACCGGGTGCACATTAAAGCACACTtagcacaaaaatatttggatgAACCACTCAAATGCATGCATTGTGAGGAAACTTTCACGCGAGGATACGACTTGCACTACCACCTACGGGACGCGCACGACATCACCGAGACGTGGATAGCGGAGCGCACCGAGAATACGCTGAGTGGACCTCTTAAAGAGTTCCAGTGCTCCATCTGCCTTAAGATATTAGCAAGCAAAGGAAACTTCGAGCGGCATATCGACTACCACAACTCGCTGAGGTGTAACTATTGTTTCGACTACTTCAGCTCGCTCCGGTTCCTTGAGGGCCACCTCGCCTTCAGCTGCGACAAGAAAAAACTCGTAGGCGACACGGAGGTACATCCCCGGAAAGTGAAGTGCCATATCTGTTACAAAGCTTTTCATCTTCAAGTAAAATTGGACTGTCATCTGAGAACTCAACacaatattaaagtttgtaaAGAGGCGTCTGAGGGTAAAAAGGATATCGTTTGCGATTATTGCTTTAAGGTGTTTGAGAATGAATATGCTTTGAGTACTCACAAGGTGTACCACCGCACAGTCGGCTACTACGGCTGCCTGTACTGCAACCGTAAGTTTAGTACCCTCACACTattcaaaaaacataaaaaccatCATTTTTCGCAGTTAAATGTTGACAACCCGAGCAAGTGCGAGCACTGCGACGAGACATTTGTCGCGTTCAGAGAGTTCATATACCACATGAGAGATGTCCACGGGGATGATAAAGAATGGACTGTAATGCCAAAGGAATCAATAGAGGAGAAGTGCCATATttgcaacaaaatatttttcaatctcCATAAACATTTGGCATATCATGAAGAGAATAGATGTAAAAAATGCCTAGAGTATTTCTACTCTCAGATCGATTATGACAATCACCTGTGCGCCATAGAGAGCGAAGAAGAGGCTGACGACAAGAACGAGAGTGATCTTGGACCGAAATACCAGGAGTGCACTTTTTGTTTCAAGCCAACGACAAAGAAGACATCGCAGCGGTTGCACGATCACATCCATAAGGTGTCCGGCTCCATATCTTGTCGCTTCTGCCCGCTCAAGTTTAAAACTATTGACGCGTTCAACATCCACGCCTTCTCCCACCGCAGCAGAAAGTACAACAAGAAGCCGTTAAAGTGTCGGGAATGTGGGGAGAAGTTCGTGCGTTACGGGCCCTTTATACGGCACATGAGGACGGTACACAAATCGAAGCAAAAGATGCACTACCGCACGATGGTGCGCCCTGAACCGTGCGTAGTCTGCGGTGATCACTTCCCCAACTTGCACAACCACTACCGTGCCCATCTTCAGAACCAGTGTCAGATGTGTCGCAAATACTTCACGTCATATAAAGTGTTCTCGCTGCATCAATGTGACAAAGAGGATTCCAACCCGTCAAAAGTGTTTACCAGCGACGAGAACCTCGTGGCTCTCATTAATTCGTATACGCCTAAAGATGAGAAAGACGACGAAAAATTCTATGGGGACAGCGACGAAGAGAACGACACTGCCGTGGAGCCACCTGTACCACAAAATGATTACATGACACAAGATGAGGAGAGTCAGAATTCAACAGATCTAAATATACACCAAATGGTCCACGCACCTATTATATCAGATGTTCTGTCGCTTTACCAGCAAAAGGAAGAGGCTTCAAATGATGTTGTCGACTTGGTGGACGACAACAGTCTTGACGGTGAAGATGTTGTAAACGTCATAACTATAGATGACTGA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTMDNNLQLADMVMECTRVKIYEGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSAVPSPPNRHSSDSAFSNNTDVSIKTQPTTSPSETKVSSASRNRKRSSESIDNTSSSGQSYDYQPTSTKRVAELRAAEKRPRRTVNSSYADSDYEENSGSQCSVETDSDEPTKSEFKCKVCGKEFASAKSVAAHSKVHLRKGYKNVIVNIPQSIENKEMENANDIEDKMYCEKCDKKFKLKIMLKRHQETCGKVLPKSPIKELQVSLEPIDSPSPQNKINCDMCSTKFKTIENLEKHMRVVHAAVLKRDKHEQIVENGSPTVPCYFCDQPFDDYNVYVEHFDTCSEKRDVIIFTCPLCRKVLSKTSTYFLHIKNMHLTVSGNQKKSLDKSVEGSFECRICSKKMATQEQLISHLAGHMSNMGEEDMAEGNVCESPTDNDPDLANYSNSNVSSGPLKCSMCEKRFTYKKALFTHEQKHLDGEIEVKQEPHETDSSLLSESNHQSESESSQEEEDGNTCDICDKSFSYKRLLIQHKKTKHNMSSGTKRAKITLKDCSVKCLICDIEMKVSAINEHNQKHTTVNIKPRNLYTCAECNEKFKSCSSLATHIKLVHRLKQPQAPKLQRADLADFCEVVVTKTEPLASGQGCDDLGTVPTVNESVPLVNLTGLTCPTCGKKMPTLISLKRHINWHSNFGNSLEKKLECFVCKETFRFQCHYRLHMREHYKDTNLDPALLTCSICNRKSKHLRAAQAHMNFHKQTRFKNKDYECSICKRVFQFRKVYLSHMAIHYKRGESANNTVVGVEASASRALSEGHTCHHCGKVCDSEVSLKHHVIWHKSKTSLFGARHECNICGIMFTNKRTLELHVRSHYEDENGPYKCTICGKGFIDEVYHRKHVKGHNFDHQSHQARIAKLRKDKVKCPICSRFYPDVVKLIRHLRRTHPESKMIKNDPDAPEQTYFSCKLCAKVFLDKRRLQHHEEAHLRKPEFFKCKFCGKKTMSLKNHRVHIKAHLAQKYLDEPLKCMHCEETFTRGYDLHYHLRDAHDITETWIAERTENTLSGPLKEFQCSICLKILASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLVGDTEVHPRKVKCHICYKAFHLQVKLDCHLRTQHNIKVCKEASEGKKDIVCDYCFKVFENEYALSTHKVYHRTVGYYGCLYCNRKFSTLTLFKKHKNHHFSQLNVDNPSKCEHCDETFVAFREFIYHMRDVHGDDKEWTVMPKESIEEKCHICNKIFFNLHKHLAYHEENRCKKCLEYFYSQIDYDNHLCAIESEEEADDKNESDLGPKYQECTFCFKPTTKKTSQRLHDHIHKVSGSISCRFCPLKFKTIDAFNIHAFSHRSRKYNKKPLKCRECGEKFVRYGPFIRHMRTVHKSKQKMHYRTMVRPEPCVVCGDHFPNLHNHYRAHLQNQCQMCRKYFTSYKVFSLHQCDKEDSNPSKVFTSDENLVALINSYTPKDEKDDEKFYGDSDEENDTAVEPPVPQNDYMTQDEESQNSTDLNIHQMVHAPIISDVLSLYQQKEEASNDVVDLVDDNSLDGEDVVNVITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01146664;
90% Identity
-
80% Identity
-