Pdem018467.2
Basic Information
- Insect
- Papilio demoleus
- Gene Symbol
- bab1
- Assembly
- GCA_029286655.1
- Location
- JAGSMY010000024.1:2035247-2046589[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-11 6.4e-08 32.7 0.0 4 35 71 103 68 110 0.92 2 2 5.1e-18 1.2e-14 54.2 0.0 1 43 217 260 217 262 0.95
Sequence Information
- Coding Sequence
- ATGGAGAAGCCGCAGGGAGCCGGCAACGTAGCGCAATACACAACTAAGACAGAAAGGCTTGTACCTAGCAGCGGCGGCGTCTCCGTCACGTCAATAATTGTAACGGCTAAACTGCTCGAGAATTCGCATGCCTGGCTCGGAGCCTCAACATCTTCGATTGCAGAATTCCACGGTACTCTGAAGTCGAAAGCACCCACCTGGACACAAAGCCAACTGCAAGAAGCTATACAAGCAGTAGTCAACCAAAGAATGCGCTTTACACAAGCTGCCACAAGATACGGAATACCGAAAGGCACTTTATACGATAATATTTTAGGAAAATCAAGAAGAATGGCGGTTCTAGATGAAGCAGGATTGACAGCAAATGAAGAGAAAGAGGTTTTAGACTTTTGTTGTGAAACCAGCGCCTCTCCTTACAACAGGAGAACTAAAAAGTCACTTCCTGAAGTGTTAACTTTTGTGGAGAAATTGAGACGAAAGAGAGAGCCTGGTTTCAAATTTATTGGTTTGACCGGTTTTAGATGGTGGTGGGCGTTCTCAGATAGCTACCAGTACCAACTGCAGTCGATGTGGCAGAAGTGCTGGAACACGAACCAGAGCCTGGTGCACAACTTGCGGTTCCGCGAGCGCGGACCCCTCAAGTCCTGGCGGCCGGAGACCATGGCCGAAGCGATCTTCTCAGTCCTCAAAGAAGGACTGTCACTGTCGCAGGCTGCTAGGAAGTACGACATCCCGTACCCGACTTTCGTGCTATACGCCAACAGGGTGCACAACATGCTCGGCCCCAGCGCTGATGGAGGCGCAGTAAAGATCTCCAAAGTGTGGACTAGATTTGAATTCTGTAGTCTATATACATGA
- Protein Sequence
- MEKPQGAGNVAQYTTKTERLVPSSGGVSVTSIIVTAKLLENSHAWLGASTSSIAEFHGTLKSKAPTWTQSQLQEAIQAVVNQRMRFTQAATRYGIPKGTLYDNILGKSRRMAVLDEAGLTANEEKEVLDFCCETSASPYNRRTKKSLPEVLTFVEKLRRKREPGFKFIGLTGFRWWWAFSDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAVKISKVWTRFEFCSLYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -