Pdem015275.1
Basic Information
- Insect
- Papilio demoleus
- Gene Symbol
- -
- Assembly
- GCA_029286655.1
- Location
- JAGSMY010000020.1:330921-335050[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-10 3.2e-07 30.5 0.0 3 39 185 221 183 226 0.88 2 4 1.2e-11 3e-08 33.8 0.4 4 39 240 275 238 278 0.93 3 4 8.5e-16 2e-12 47.1 0.1 2 45 293 337 292 337 0.96 4 4 2e-16 4.8e-13 49.1 0.0 4 42 347 386 344 388 0.92
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGAGGCTACTTGGTGAAATGCGAGCCGGCGTCAGAGGGCGACGACAGCAGTTCACACTCCGCACACGACTTCTACCATCAGTCCACCCCGCTGCCGGCCGCGGTGAAGGTAGAACCGTCCGAGCACGGCGAGCAGGATGCCGCCTCCCACCTACTACATCACCTACaaGTTGGCGTTGGCCTGGACCTATGCCCGCCCGCGCCCGCTGCGCCGGCCGCCACGCcggtgcgcgcgcgccgcacgccgcacgacGCGCCTGCCTCCCCGCCCTCGCCGCATGCCGCGCTCTGCCTCGAGACTCTAGAGCCCGCGCGTGCCCGCAACGGCACGACCTTGCTGGATCATCTGAGTCTGATCGGGGACGCCGCGGAATCCAATTTCATGCCTCTGCTGCCCTTCAAGGATGAACCGCTCTCGGAGGGCGAGCAGCAAATGTTGAGCGACGAGGCGAGCTCGTGCGGCGGGAGCAGTGAGGGCGCGGAGGGTGCGGAGGGCGCGGAGTGCGGCGACAGCGCGCACTCGACGCGCGGCTGGGGCCCGCGTGACATGCAGCGCGCCCTGCAGGCCCTCCGCGACCGCCGCATGACGCTCACCAAGGCGTCGGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCGGCGGCTGGGCATCGACACGCCGAAGCGCGAGGCGGCGGCGCGCAGCTGGGGCGAGGTCGAGCTGCGCGCCGCGCTGGCCGCGCTGCGCGCCGGCACGCTCTCCGCCAACAAGGCCAGCAAGGCATACGGTATCCCGAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCTTTCAACGCGGCGCCGACGCGGTGGCGGCGCGGCGACTTGCAGCGCGCGCTGGCCGCCATCCGCTGCGGCGCGGCGTCGGTGCAGCGCGCGGCCCAGCAGTACGGCATCCCCTCCGGCACGCTGTACGGCCGCTGCAAGCGGGAGGGCATCGAGCTGTCGCGCGCCAGCCCCGCGCCCTGGTCCGAGCGCGCCATGGGGGACGCGCTGGAGGCCGTCAGGGTGGGTCAGATGTCGATCAACCAGGCGGCGATCCACTACAACCTGCCGTACTCCTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACACGCCGCAGTTTTCCCAGTACCGGCAGTGTGACACACAGAACTACGAAGCGGATCAGACGGTGCAGGTCAGCGAGGAGTCGCTGTGCTACTTCCCGCCGCAGTCCGCGTgcggtggtggtggtggtgatggTGTGGAGGGTGTGGTGTCGTGCGGGCAGGTGGTGCGGGAGGCGCGCTGGCCGCCCTGCGCGCCGCACTGCGCACACCCACACTGCGGACTCACCAGTTGA
- Protein Sequence
- MPGYGGYLVKCEPASEGDDSSSHSAHDFYHQSTPLPAAVKVEPSEHGEQDAASHLLHHLQVGVGLDLCPPAPAAPAATPVRARRTPHDAPASPPSPHAALCLETLEPARARNGTTLLDHLSLIGDAAESNFMPLLPFKDEPLSEGEQQMLSDEASSCGGSSEGAEGAEGAECGDSAHSTRGWGPRDMQRALQALRDRRMTLTKASATYGIPSTTLWQRARRLGIDTPKREAAARSWGEVELRAALAALRAGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTRWRRGDLQRALAAIRCGAASVQRAAQQYGIPSGTLYGRCKREGIELSRASPAPWSERAMGDALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYTPQFSQYRQCDTQNYEADQTVQVSEESLCYFPPQSACGGGGGDGVEGVVSCGQVVREARWPPCAPHCAHPHCGLTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -