Pdem003354.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio demoleus
Gene Symbol
JARID2
Assembly
GCA_029286655.1
Location
JAGSMY010000004.1:5472442-5480375[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.4e-19 9e-16 58.6 0.0 7 89 492 571 487 571 0.91

Sequence Information

Coding Sequence
ATGAAAAGaaGAAAAGTACAAGCGCAACGAAAATTTGCTCAAGGTGTATATATTCCCCCGAGTACACAAActacaaatattgataaagtATCAAATTCACAAATCCCAAAGGACAATGAGATTAGAAGCAATATTTTTCACAGTAGCACATCTGCTAAAAGTCTTCTTGATCTCATAAGCTTCCAAAatCTTCATAAACATAGGGAGCCTATAGTCTTATTAGAGCGATTACGACATTATCCTGAACAAGTTCAAGCATCACCACCCGAAGTGTCTCAACAATATAACATAAGtcaaatgaaaaaaAACAAACGGCAACCCAAGGTTACCAAAGATGCATCCAGCTTAGAATCTATGGATTCCTGCAATGAAGATGACAAACCTTTAATGTACCTTGCCAAAGAggagaaaaataataaaactgtgAATAAGACATTATGTACTAAAGATAAAGAGAAGAAAGTAACTTTTGACATTGGCCCCCATGAACATGCTTCTGATGCTTATGAACCACAACAAAAGAGTGGGCAACAATATGACTCGCGCCGTCATGGTTCTGCAAGACATAAAGaTGGACTAAGAAGGCGATCTCTAGTACACACTCGGTCACACAGAAGGACTACAGTTGGTGCACGTGAATTTGAGCAGGCCATTTCGCTGGATCCTGCTATGCTTAAAACAGATAGAGTGAAAAGACAGCGCTTGCACACCCGTTCCAGTCGACGGTCGGTGACTGATGCCTGCGAATCTGACAATGGGGAGCAGCAAGAAAATGATGAATCAGGGTGCAGTAGTTCCTCAAAGAACACGGatgaaacaaaaaagagCAGTCTGCAAACCCGTAGGTCTACCTCACGTTCTGTGGATGAAGCATGTGAATCGGGACGAGAGGATACCAAGATTGGACAACCACTTTGTGATAGTATAATGCGTAATACagatGGACTAAGAAGGCGATCTCTAGTACACACTCGGTCACACAGAAGGACTACAGTTGGTGCACGTGAATTTGAGCAGGCCATTTCGCTGGATCCTGCTATGCTTAAAACAGATAGAGTGAAAAGACAGCGCTTGCACACCCGTTCCAGTCGACGGTCGGTGACTGATGCCTGCGAATCTGACAATGGGGAGCAGCAAGAAAATGATGAATCAGGGTGCAGTAGTTCCTCAAAGAACACGGTAAACGGAGATCACAATGGATCAGAGGAAAAGAGTTCAGTAATACTTAAGCCGATGCTCAAAGCGAGCCAAACAGATGCACCAATCTTCTATCCTACTGAACAAGAATTTGTGGATCCCATTgcttactttaataaaattatgccaATTGCTGCTAAATTTGGGTTATGTAAAGTTGTGGCTCCTAATACTTTTAAACCAAAGTGTATGTTGGATGACGAAGTACGTTTTGAAGTGACGAACCAATACATATCTCGTCTGTACAAACGTTGGGGACCGGCATCGAGGGAATTATGTGCCATTAAAGCTTATTTAGCTTCACAAAGTGTGATCTTCAGTCGACCACCTTTGcTCGAAGGGGTCGAGGTCAACTTACCTAAATTGTATTACTTGGTACAAACATTGGGCGGCCTTAAAGAAGTTATCGAAAAGAAGCGGTGGACTAAAGTTGCTGAAGAAATGAATCTTGCCAAAACGCCAAAAATTGAAGTCAAATTGGatcaaatttatgtaaaatatatattgccTTATGACACAATGACAGATGATGAGCGGAAAGATCTTATGAAAGCAGTTGATAAACACTGGAGCAAAAAGCATCGAAAAATGCTACAACGTGCTATGAAGCCACTTTACAGACAGAAACGTCTTTTAGATGAATCTGAATCATCTGAGGAAGATGTTGATGAAGATATTTATGTATCGGGAGCATTGGCAGAGGCCGAGGACTGTATCAGCAATGGCAGGCAAATGAATctacttacttttaaaaagGTGGCAAGTAAATGTATGGAAATGTACATACCAAATAGTATTCAGAATACTCTGACTGATATAGAACAAATATATTGGAAAATGGTACTTCTTGCACAAGATCATATTTGTGTCAATAACGCATCCATCGACACCGGAGAGGAAGGTTATGGTTTCACTAAGGACCAAAGAGACTCTTATGGGAAACACCCATGGAATTTAAagGTATTGAGTCAGAATAGCGGGAATGTTCTCAGATTTTTAGGACCAGTATTGGGAGTAACCGTACCCACTTTGCATCTTGGAATGGTTTTTTCAACTAGTTGTTGGCACAGAGATCCTCATGGTCTTCCCTGGATTGAATACATGCATACCGGACCTGGAAAAATTTGGTATGGTATTCCGGATGAACAAAGTGATAATTTCCGAAGTGCAGTAGAATTGCTATGTCCAACTTCATGTCAGAACAAATCTATTTGGCTTCCATCTGATATTACGATGATTCCACCTGATCTActcttacaaaataatgtgTCCATGTCTAGAGTAGTTCAAGAGCCGGGacaatttattgttgtttttccAAAGGCGTATTCATGTTCTATTGCAACAGGATACACTGAATCTGAAAGTGTTTATTTTGCTACTAATTCATGGTTGGAATCAATTGATCAAGTGTTTCaaGAAGTACGTGAGAGCTGCGAACCCACAATGTTTTCGCTGGAGCACTTGCTGGTGTCGGCTGCACGGGATTCGCGAGCACCCACTGAGGTCCTCAAACTGGTTAATGTACACCTCGGGAAAGTCATCAAGGAAGAGCTGAGTAATCGCAATTCCCTCGCCGCATACAAAATTCAGaGTCAAAATCCACAACAGAATAAGCATTCCCGCAAGCGTCCCGCGGGGGCGTGGAATGTTCGAGATCAAGACGAGTGTGAGATCTGTCAAGCGACCTTGTATCTCTCCAAAGTGCGGGGATTGACAGACAAGAAACGTTCAGTGTGCCTCCAACATGCCTTACAATTGCTTGAGCATACAAAGAACAAGGACCGTGACTTGACCTGCGTCGAGCTAGAGTTATTCTTTTCCGATGCAGAATTAGAAAGAATTATGACAAAGATCAGCaatcgaatttaa
Protein Sequence
MKRRKVQAQRKFAQGVYIPPSTQTTNIDKVSNSQIPKDNEIRSNIFHSSTSAKSLLDLISFQNLHKHREPIVLLERLRHYPEQVQASPPEVSQQYNISQMKKNKRQPKVTKDASSLESMDSCNEDDKPLMYLAKEEKNNKTVNKTLCTKDKEKKVTFDIGPHEHASDAYEPQQKSGQQYDSRRHGSARHKDGLRRRSLVHTRSHRRTTVGAREFEQAISLDPAMLKTDRVKRQRLHTRSSRRSVTDACESDNGEQQENDESGCSSSSKNTDETKKSSLQTRRSTSRSVDEACESGREDTKIGQPLCDSIMRNTDGLRRRSLVHTRSHRRTTVGAREFEQAISLDPAMLKTDRVKRQRLHTRSSRRSVTDACESDNGEQQENDESGCSSSSKNTVNGDHNGSEEKSSVILKPMLKASQTDAPIFYPTEQEFVDPIAYFNKIMPIAAKFGLCKVVAPNTFKPKCMLDDEVRFEVTNQYISRLYKRWGPASRELCAIKAYLASQSVIFSRPPLLEGVEVNLPKLYYLVQTLGGLKEVIEKKRWTKVAEEMNLAKTPKIEVKLDQIYVKYILPYDTMTDDERKDLMKAVDKHWSKKHRKMLQRAMKPLYRQKRLLDESESSEEDVDEDIYVSGALAEAEDCISNGRQMNLLTFKKVASKCMEMYIPNSIQNTLTDIEQIYWKMVLLAQDHICVNNASIDTGEEGYGFTKDQRDSYGKHPWNLKVLSQNSGNVLRFLGPVLGVTVPTLHLGMVFSTSCWHRDPHGLPWIEYMHTGPGKIWYGIPDEQSDNFRSAVELLCPTSCQNKSIWLPSDITMIPPDLLLQNNVSMSRVVQEPGQFIVVFPKAYSCSIATGYTESESVYFATNSWLESIDQVFQEVRESCEPTMFSLEHLLVSAARDSRAPTEVLKLVNVHLGKVIKEELSNRNSLAAYKIQSQNPQQNKHSRKRPAGAWNVRDQDECEICQATLYLSKVRGLTDKKRSVCLQHALQLLEHTKNKDRDLTCVELELFFSDAELERIMTKISNRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-