Pdar010763.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- -
- Assembly
- GCA_013186455.1
- Location
- QDHC01006828.1:726460-736149[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.21 17 6.2 0.2 2 21 1429 1448 1428 1449 0.87 2 7 1.6e-05 0.0012 19.2 0.8 2 23 1546 1567 1545 1567 0.95 3 7 0.00074 0.059 13.9 4.2 1 23 1586 1608 1586 1608 0.97 4 7 0.0035 0.28 11.8 4.2 1 23 1646 1668 1646 1668 0.98 5 7 0.00048 0.038 14.5 2.5 1 23 1688 1710 1688 1710 0.95 6 7 0.083 6.6 7.5 0.4 1 20 1734 1753 1734 1755 0.93 7 7 0.091 7.2 7.4 1.1 5 23 2121 2140 2118 2140 0.90
Sequence Information
- Coding Sequence
- ATGGATAGATTGAATCAGTTGAGGAGCGAAGCGGGCGGCTCTGGAGACTCTTCTCTAGACACGTCTTCGTCGGCGAGTGACGCTTATTTGACTGCAAACGAGAATTCAAAGTTCTTTTCAATATTAGAAGACGATGCGAGCTTTACCATCGCTAAGGATGTCAATTCCGATCAAGAAACCGCGGTCACGGATGATTCTATGATATCCAATTTATCACCGATTTCTAAGTCGAGCGATTTGGCAAGTTACAAGATCGGTAAACAAATAGAAGCGGCGAACATTTTGTCTGGtggtattaatattttcgagGACAATGAAAACTCTTATGATGGCGATGAGCTTGTTATCGACGACAACGCTCCGGAGAGTGATGAAAAAGTTAATTTGGcggataaaataattgaagatCCATACGATAAGGTTGAAGATAATTTGGCGGGAAATATAGATGATGTGGAGCCAGTCATACCGAGTAAAGATACGGAAGTGGTACTTCAGATTGATGGTAAAAATGTTGATGCGATTGACATCGGCAATGGCTTGTATTTGTATAGGAAAGAGGGTGAAGAGGAATTAGCCGCTGTTCAGATAGTCAATGATGATCAGCAACAGTCAAGCTTCAAATTCCTAAAAGTCCGtgAGAATACAGAAGGCAATTTAGAAGTCTATGAAGAAATTGAAATAGAAGTACCAAAAGAAGTTcCTGTAAAAGAAGGAAAACCAACAGATAATTTATCTCAAACCCCAACAAAGGACAAAAACAATGTAATCAGTGAACCTATTCAAGTTgaggaaaagaaaataaacacacCTCTAAAAGAGACACCTTCAAGTGAAGTAAATGTAGACTCGAGTAAAGAATCTCAATCAGATTCAAAATCAGAAGTAAATCTAAACGGAAAGATGATGAAGTTTAGTGAATCTCGAAAATCTCCCGTCGTTGGCAGTTTCACACCAATGACATATCATTCCACCCCTAATAAAGAAGGCATCCCATTAACAAAGACCATGGTTGACCAGCAACTACACCCTAGCCGGCATTCAGATAATGTGAAGAAAACAATAGAAGTCCACACTGACAGTTCAAAGCAAAAGAACTTAGATGGACCCGTTAAAAATTTGAAAGAAATTTCTGAAACGAATGTCCCAGTAATAACAGATAAGGAGTTAAAACAAACATCGGAAGAAAACAATGATATTGACGTGACAATTCCAGAGAAGAGTATGGTAGACAAGCAAGATTCGACACTTGGTAATGAAGATAAAGAagagaatattaataaaatggcTTTGGATGTTAGCAAAGCTGATCATACTTCAGCACAAAATGATAAACTAATAAATGAAGAAATTAATGTTACAGAAATACCAAAGAATGTTACTGAATTACATACCCAAAATGAGGAAGAAATAGAGCAATTACCGAACGTTACTGATAATACAACAACTATAATGAACAATGATATTGGAAATAGTGTTGATGTTAGAGCCATTTCTGAAGATAACGTTGATTCTACACAGGAATCTAAAGAAAAATCTGTACAAGAATGTGAAGTTATGGAAGTTGATGAAATTGTTgcgaacaaaaatatacaagaaatTCAAACAGAACAAATTACTACATTAAAGATTAATTCAGAATCTATATTAGAGAAGGAAACTAAAAGTTCCACTATTCCAATCGATTGTACATCCTCAGTTGCTCCGACAACTGTAAAAGATATTCCTATTACAGAGCAAGAAACTGTAATAGACAGTGTTAATGAGGAAAAAGACAAATCCCAAgaacaaaatatagaaatgaaTAAAACCACAAAAGTTACTGAAAGTAAAAACATGTCATCTAATGAGACAAAAACAGATCAAATTATACAACCAATATTAGATTTGccaaaatcaaatttaatagAAGAGGAAAgtaaacagaataaaaaagatcaagaaaacagtaaaattaatatcgaAAAGTCAATAAAGGAAGGTAGCAATGATCACAAGACGATGGACCCAAATATTATTGCTCCAAAGCCTAttgattttaagaataaaagtaaaacgtTGGAAACTCTTAAAAAAATCCAACTTAATGTAAAGAATGAAACTAAAAAAGAAATCCCCAAAATCACTAAGCACGTTGTTGGCTCAAAAGCggtaaacaataacaatgcTGCAGTTCCATTTGGCAAGTGGACTGAAGCTAACAGAcaagagtttttaaataaaattaaagaaaccaAAGTAACAACTAACAGTTCTAATACAAAACAGATTAAACAACCAAATGATTTGAATAGACGAGACGTTTTACAGAAAATTGATAGTCAAAGACAACAAACTAGTAATGCCATGGCCAAAGTTCAAGAGCaacagaaaataaaatctaataaaaatgaaacagcTGCATTTAAGCCTGCAGTGAAACAAGACGGTAAACCAAGTGTCAAAGACCGCCCAGCGTCAAAAATCAAACTTGTGACTAGTAAGAAAAATACGAAGGAAACTTCTGCTGCAAATAATCAAACTGAATGTGCAAATCTTATAGCAATATCTAACATAAATAAGAAAGAGTTATTACAGAGAAGAGAAATAAACAATCAAGCACTAATTGATAAAACTATTGAggaaattataaacagagtTCCTCCAGCTAAAACCACAACCGAGGATCGCCCGCAAAACAATTCAAACATGGAAGGAGTAGAGAAACAAAAAGGTATGACCTTATTCGGACCTTCATATCATGCCAACAACAATCAACCTGTTACTTTAGACGAAATTGAGAGCAAAATGAATGAATTACACGGCATACCTTTTGTGGAAAGACCAGCCCATGAATTACCTCAAAAATTTGTTGTTGATAATATCTTATCTTCCGACAGTCCTAAAAGCAAACCCGACAAGGCACCCAATTTGGTATCACAGCCAAAAAGTAGCGTGCAACATACTAATGAAGTCGTGCATATAGACTCAGACGACGAAATAATAGAACATGAACCAATAACGGGAGACGTAAATCCGAAAAAGACAGCTGCCGAGGATGCAAAAGAAACATACGACTTAGAAATGGAGCTAGCTCACAAAGAAACTGACGAAGCTAAAAAAGAAGTAATAATAACAGAAAAtgattttgataaattttacAGAAGAAATTCTGTAACTTACGAAAATTGTCTTACGGTTAATTTAGATGGGAAAGAACAACATAGTGTTGTACAAACTGCGGTAGAGAAAGACAGTGTTCCGAAGAAGTTGACAAGAAATGAAGTGTTATTGGCCGAGTCTAAGGCGAAGTCAACACACAAACAGCAAATGTTACAAGCGCGTCACAGTAACTATCATAGCAAAATACCTGTTTCTAGTAAACATCAAACATCTGATGAAGAATCTTCCGGAAAGAGCTATCAATCTAAAGTGCAAATTGCATATCACACTGCGTTGACTGCTAAGCGGCAAAAAGAAAGCCCAATTACTATAATTGAAGAGAAACCAGTTAAGGTGGTGTTTATGGATTCAAGTGTTGATTTCGTGCCGAGTCAACTAAACGTACAGGGCGAAAAGCTATCTCCAATCAAACAATTTACACCAGATTTAGAAACGTTCACTCACAGCACAACAGATTCGTTAGATTCAGATATTTTAGACaacgtagattataaaacTCAGGAAGAGACTAAAACTAAGAGCAAGCATCAGAGAAAACAGGTGTTAACACCTGTGGAGGCACCAGAAATGGAATTAATACAATCCGACGATTTAGAAATTGAGGTATCGCCAAAGAAAAAACGCCGAATCGAGGATAGGCTTGAAAAAAGTCCTAAAAATCATGTTCCGAAAAAATCATACCTTCTAGGGCGTGCTAATGCCGAAGACAAGAATAAAACGCAGGAGGTAGCTAAAGTTACTATTAACGAAATAAACAACCACACTAATTCATTTGTTGCTCATTCAAATCCAATAAGTGCTATCGATAACTTAGTTAAAGCTGCTGAGCTATTGGAAAACCAAGCTGAAATCAGCAGTACTTCGATAAAAACACAAGAATCAGACGCTCAACTGCAAACACCGCCTAAAAGGGGACGAGGACGTCCTCGAAAGTATCCCCTTCCAGATGCAGACTCGGATAATAGTAAAGCTTCGAGCCCACAGAAGAAACCAAGGTTAATAGATGCAAAAGTGTCCAAGCCTCCGAAAGTTCCGAGTCCCGAGCAAACCGATGAAGACGATACTAGCGATgacgaaattataaaagaaaattggaCAATGGGTAAAATAAATGAGAATATTGTGTGTCCTATTTGTAATAAACTCTTCCGATCtgaaaatgtagtttttaaacatgttaaaCATTGTACAGGTCCATCGCCAAATCGTTCGGAATCCGACAAAAGAAGGTTTAGAGAATCTCAAGAATTCGAAACTAGATCACACGCAAGTAAATCTGACGACATGGATTTAGAAGAGGAGGAAATTAAAACTCCtaagaaaagaaaatcaaaagaAAGCGTATCTAAAGTTTCTAATCCAGATGAAGATATAATGGAAGAACCggttaataaagaaaaaacggCGAAACAACGTGAATCTAGAACATCGacagtaaaaacaaaaaataacagtcAACCTAATAGTAATATAGTATGTGAAATTTGCGGAAAGAGCTTCCGACACTTGTCATACTTAGCTCAGCATAAATTGCAACATAAAAATGaagatacaaagaaaaatgatAGCGAAGTGCATGTCACTAAGTCAGTTTTCAGTTGTGACATTTGTAAAAAAGAATTTAGAAAGTTGCATCATTTAGTACAACATAGGATTATTCATAATCCTAGTTCGATGCCGACTAGAACATTGCGGAAAAGTTCATCTGAACAAGCCGacaataaaattgtcaaaGAACAGAGCGCAAAACCGACTGAGGATCATAGTGCTGGGTTCCGCTGTGAACCTTGCGACAAGTCGTTTAGAAAACTTCATCATCTCGTCGAACATAGAGAGACGCACGATGGAATAAATAGACAAAAAGCTATTGAAGTTGAAACTCCGAAGCCAGCGCCGGTACATCAATGCGACATTTGCGATAAAACGTTTAAGAAACTCCAACTATTGAACGAACACAAGGACCAACATTTAGAAACTTGTTCAGAAAAATCTGataaaagtgttaaaagtTCATTCAGTTCTACTAAAGACATTATACACGAGTGTTCACTGTGCTACATGGTTTTTCCTAACGAACTTTCCCTAAACAAACACACagaaaaatgtttaagaaAAAAGAGACAGTCTATTGCAAAAGCCAAACAAGCCGCGTTAAAGAAAGAATTAGAAGGAGAATCGCTAGATACAGAAAGTCAATCGGAAGAGTGTCTTAACGAAAAAGATGATTCATTGATTATCTTAGACGACAATGATGACGACagcattgaaataattaatatcaagCAAAATAAACTAGAAGATAATAAACACATAAGCGATAGCAAAGATGGAAAGTCCGAGtctaataatagtaataatggTAAAGTTTTGTCCAATGAACAAAAGgacgtaaattatattatgccTATAAAACAGGATCCTGTAAAAGCTTCTACCGAGACTAAAAAAGATATACTAGAGCAAAATGTAACAGAAACTGTCGTCAACACAGAAGTTAATATTCCCCAGCACATaccttcaaaaataaaaaatgacgaAAACCTTAAACCAAAAGTTAATGATACATtagttaataagaaaaaaaatatatctaaagaAAAGGTTATCCCTACTATTACAAAACGAAAAAAGAGTTCAGATGTGTCCGTTTCTGACAATGAGCCTCTGAAGCCTTCGATTGAATCGAGCGACGAGGACGACGTCAGGTACATGCTCAATCCAGATTTCAAAGAGGAAACATCAATGGAAGAGAGAAGctttatgaaaatcaaaactaAGAAGCGCAATTCTCTACATTTCGAAAGACCTAGTTCAAGGGATTTGTTGAAGAGAAGGATTTCTATGCAATTGCCGCTAAAAACGACTCGCTTGAAAAAGTCTATCGAACAAACGGCAATCGCACCCTCCACGTCCACAACCAAGTCGACGACTCCAAAAGCCGGCGAGAAACCAGCGACTGCCACCGATTCTGACGACAGCGACACCAAATATGCTTTCCCCGAAACCGTCAAAGATACCCCCTCCACCAGCTCAGTGAAGAAACCTCAGAAGAGGAAATCCATAGCAACTAAACGGAAACTATTGAGTGGAGTCGTGAAGAGAAAATCATTAGGAAGACCCACTAAAGTGAAGCACAAATCGAAACCCGAACCAGTAAAGCCTATTAAAAAACGCACAACAGAAGTGGAGCACAGATGTGATTGTGGTAAGTTGTTCAGCAGCGCGGCGCTGCTGTCGCGCCACACCACGCTCGACCACACGCCGCCGCGCAGCCGCCGgcgccgctcgccgccgccggAACCTGACGCCAACGTCGCCAAGCTCACAAAAAAAACTCCCCCGAAGAAAACAAACGTTAAAGCCACCGGGCAAGCCAAAAAAGTTGAGAATACTAGAAAGTCTGGCGTCACAACTAGAAAGTCTACTACGAACAACAACGACGCCAAACCGTCCCGGGACACGCGGAAGTCGTTGAAGCAGACGCCCGCCGCGAAGACGCCGAGCGTTGCGGCGCACAAGGGCGTGCCCGTGCCCGACGAGTTGAGGAAACACGTCGCCAAACAActtttaaagaagaaatag
- Protein Sequence
- MDRLNQLRSEAGGSGDSSLDTSSSASDAYLTANENSKFFSILEDDASFTIAKDVNSDQETAVTDDSMISNLSPISKSSDLASYKIGKQIEAANILSGGINIFEDNENSYDGDELVIDDNAPESDEKVNLADKIIEDPYDKVEDNLAGNIDDVEPVIPSKDTEVVLQIDGKNVDAIDIGNGLYLYRKEGEEELAAVQIVNDDQQQSSFKFLKVRENTEGNLEVYEEIEIEVPKEVPVKEGKPTDNLSQTPTKDKNNVISEPIQVEEKKINTPLKETPSSEVNVDSSKESQSDSKSEVNLNGKMMKFSESRKSPVVGSFTPMTYHSTPNKEGIPLTKTMVDQQLHPSRHSDNVKKTIEVHTDSSKQKNLDGPVKNLKEISETNVPVITDKELKQTSEENNDIDVTIPEKSMVDKQDSTLGNEDKEENINKMALDVSKADHTSAQNDKLINEEINVTEIPKNVTELHTQNEEEIEQLPNVTDNTTTIMNNDIGNSVDVRAISEDNVDSTQESKEKSVQECEVMEVDEIVANKNIQEIQTEQITTLKINSESILEKETKSSTIPIDCTSSVAPTTVKDIPITEQETVIDSVNEEKDKSQEQNIEMNKTTKVTESKNMSSNETKTDQIIQPILDLPKSNLIEEESKQNKKDQENSKINIEKSIKEGSNDHKTMDPNIIAPKPIDFKNKSKTLETLKKIQLNVKNETKKEIPKITKHVVGSKAVNNNNAAVPFGKWTEANRQEFLNKIKETKVTTNSSNTKQIKQPNDLNRRDVLQKIDSQRQQTSNAMAKVQEQQKIKSNKNETAAFKPAVKQDGKPSVKDRPASKIKLVTSKKNTKETSAANNQTECANLIAISNINKKELLQRREINNQALIDKTIEEIINRVPPAKTTTEDRPQNNSNMEGVEKQKGMTLFGPSYHANNNQPVTLDEIESKMNELHGIPFVERPAHELPQKFVVDNILSSDSPKSKPDKAPNLVSQPKSSVQHTNEVVHIDSDDEIIEHEPITGDVNPKKTAAEDAKETYDLEMELAHKETDEAKKEVIITENDFDKFYRRNSVTYENCLTVNLDGKEQHSVVQTAVEKDSVPKKLTRNEVLLAESKAKSTHKQQMLQARHSNYHSKIPVSSKHQTSDEESSGKSYQSKVQIAYHTALTAKRQKESPITIIEEKPVKVVFMDSSVDFVPSQLNVQGEKLSPIKQFTPDLETFTHSTTDSLDSDILDNVDYKTQEETKTKSKHQRKQVLTPVEAPEMELIQSDDLEIEVSPKKKRRIEDRLEKSPKNHVPKKSYLLGRANAEDKNKTQEVAKVTINEINNHTNSFVAHSNPISAIDNLVKAAELLENQAEISSTSIKTQESDAQLQTPPKRGRGRPRKYPLPDADSDNSKASSPQKKPRLIDAKVSKPPKVPSPEQTDEDDTSDDEIIKENWTMGKINENIVCPICNKLFRSENVVFKHVKHCTGPSPNRSESDKRRFRESQEFETRSHASKSDDMDLEEEEIKTPKKRKSKESVSKVSNPDEDIMEEPVNKEKTAKQRESRTSTVKTKNNSQPNSNIVCEICGKSFRHLSYLAQHKLQHKNEDTKKNDSEVHVTKSVFSCDICKKEFRKLHHLVQHRIIHNPSSMPTRTLRKSSSEQADNKIVKEQSAKPTEDHSAGFRCEPCDKSFRKLHHLVEHRETHDGINRQKAIEVETPKPAPVHQCDICDKTFKKLQLLNEHKDQHLETCSEKSDKSVKSSFSSTKDIIHECSLCYMVFPNELSLNKHTEKCLRKKRQSIAKAKQAALKKELEGESLDTESQSEECLNEKDDSLIILDDNDDDSIEIINIKQNKLEDNKHISDSKDGKSESNNSNNGKVLSNEQKDVNYIMPIKQDPVKASTETKKDILEQNVTETVVNTEVNIPQHIPSKIKNDENLKPKVNDTLVNKKKNISKEKVIPTITKRKKSSDVSVSDNEPLKPSIESSDEDDVRYMLNPDFKEETSMEERSFMKIKTKKRNSLHFERPSSRDLLKRRISMQLPLKTTRLKKSIEQTAIAPSTSTTKSTTPKAGEKPATATDSDDSDTKYAFPETVKDTPSTSSVKKPQKRKSIATKRKLLSGVVKRKSLGRPTKVKHKSKPEPVKPIKKRTTEVEHRCDCGKLFSSAALLSRHTTLDHTPPRSRRRRSPPPEPDANVAKLTKKTPPKKTNVKATGQAKKVENTRKSGVTTRKSTTNNNDAKPSRDTRKSLKQTPAAKTPSVAAHKGVPVPDELRKHVAKQLLKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141239;
- 90% Identity
- -
- 80% Identity
- -