Basic Information

Insect: Papilio dardanus
Gene Symbol: -
Assembly: GCA_013186455.1
Location: QDHC01007131.1:58044-67597[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.12 9.6 7.0 2.3 1 19 250 268 250 270 0.96

2 8 6e-05 0.0048 17.4 1.7 2 23 402 423 401 423 0.96

3 8 0.79 63 4.4 3.0 2 23 431 451 430 451 0.93

4 8 7.8e-05 0.0062 17.0 0.7 1 21 457 477 457 482 0.94

5 8 0.0014 0.11 13.0 0.3 1 23 490 513 490 513 0.94

6 8 0.001 0.083 13.5 0.8 1 23 519 542 519 542 0.97

7 8 0.00021 0.017 15.6 0.5 1 23 552 574 552 574 0.92

8 8 9e-05 0.0072 16.8 1.5 2 23 581 603 580 603 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.12	9.6	7.0	2.3	1	19	250	268	250	270	0.96
2	8	6e-05	0.0048	17.4	1.7	2	23	402	423	401	423	0.96
3	8	0.79	63	4.4	3.0	2	23	431	451	430	451	0.93
4	8	7.8e-05	0.0062	17.0	0.7	1	21	457	477	457	482	0.94
5	8	0.0014	0.11	13.0	0.3	1	23	490	513	490	513	0.94
6	8	0.001	0.083	13.5	0.8	1	23	519	542	519	542	0.97
7	8	0.00021	0.017	15.6	0.5	1	23	552	574	552	574	0.92
8	8	9e-05	0.0072	16.8	1.5	2	23	581	603	580	603	0.95

Sequence Information

Coding Sequence: atgaacGTGGAAATATTGAAGCGTAAAATATGCAATACATGTCTTAGTTCTGAtcgtgaaataataataataaataaacaatcacatttatataaagtttatcGCTTGTTGTTATCAGAATGCGCGGGTcatTTGGATCCATCATCAGAACAGAGTTTAGTGGCTTGTTGGGAATGTATTgctttgttaaaaaagttcAACAAATTCAAACAGCAAGTCCAAACAGCTCAGGAATATTTTCAAGGATATGGTGAATCTAAGggTTCAAACTTTTCATTTGCTCAGCCACTATCATCTCTGCagttattacttaaattagGATATGACAAAGTATTTGTTGAACAAAAGGAAATgtattcacaaaatattaacattttggaGGTAAAAAAAGAACTGGAAGATACTGAGCAAGACATATTAGAAgttccaggCTTCATATTAGACAATAACACTTCAGTATCACACATTGAAGTCAAAATAGAACCTTTACCAACAGACATAGACCAGAAAAATCACAATGAATTTTTATTACCACAAACAATCACTGTtgggACATCAAAAGAACATACAGAATTACAAGAAAATGCACAAGATCCCAAAATAGGTCTCATAGAGGAGAAGAAAAAAagagttattaaaaagaaagctGAATTTAAATATGGATATATCACTGAATATATGAATTATAAAGATATGCTGGCTTTCAGGGAGGAAGCAAAGAAGAAAATTTATTACGCGAACGCAGCGTACAAGTgtgaaaaatgtattcttgGCTTTTACACAAAACATCATTTGGAGGAACACTTCGAATGCGCACATAAACCCAGGGAGGGCACCGCGCTCTGCAAGGTATGCTACACGTACGTAGAAGAGGGTCAGGAGTCACAGCATATGCAAAGTCACTATATGAGGTACGAGTGCCGTCAGTGCGGCCACATGGAGGCGACGGTCCGCTGCGCACAGCTCCACGACCAGACACACATAGAAACCGACGCTGACTCCAAGCCTGTCAAGATACGACCTATTAGGATGCGTAGAAAGAAACAAACTCAAGAAACGCAACAGGTTAAGGAAGAAGCGAAAAAGTTAAGGAAGCTATTGTCAAAAACAAATTCTGGTTACAAATGTCTTTACTGTGATATGCATTTTGAGCACACACGGTATCGAAAGTGTCACATGGACAGATATCATAGGGAGCGTCTTGAATGTGATCATTGTCAGAAGAAGTTCGTCAATAGAACCACCCTTATAGGACATCTTAGGTTACACGAAGGTCCATTGCCGCGTCAGGAATGTAATATATGTCACAAAATGGTTcgaatattacaatttaaatatcatttgaaAAGACACGAGAGCAAACAGACATACGAATGTAAGGACTGCGATAAGGTTTTCTCAACTCTGATGACGTATCAAGGACATCTGAAATACTCTAGAGCGCATGCGTCGGAGGACATACTCAAGTTCCCCTGCCCTACTTGTAATAAAGGTTACCCTACACGAGAAGCGATGCAAGATCACTTTAATTACCAACATTTAGGAAAAACATCACATAAATGTCCTATTTGTGAtaagCCTATAGCTTCCAAAGTGTGTATAGAGAGACATCTAATGCGGGTACACGGAGAAAAGAAAGAGAAGCCCAAAAACCACATCTGTCAGGAGTGCGGCAAAGGTTTCTTTGATAAAAGATCACTTATCCAACACGGTGTGATACATTCACTTGAACGACCTCTGTCGTGTGATATATGTCAACAGACGTTCAAACAGAAGGCCACATTATATACACATAAGAAACgagtacataatataatacctaataagaaaattgttgaatttataaatgataataCTGAAGAAGCAGAATCTAGTTGA
Protein Sequence: MNVEILKRKICNTCLSSDREIIIINKQSHLYKVYRLLLSECAGHLDPSSEQSLVACWECIALLKKFNKFKQQVQTAQEYFQGYGESKGSNFSFAQPLSSLQLLLKLGYDKVFVEQKEMYSQNINILEVKKELEDTEQDILEVPGFILDNNTSVSHIEVKIEPLPTDIDQKNHNEFLLPQTITVGTSKEHTELQENAQDPKIGLIEEKKKRVIKKKAEFKYGYITEYMNYKDMLAFREEAKKKIYYANAAYKCEKCILGFYTKHHLEEHFECAHKPREGTALCKVCYTYVEEGQESQHMQSHYMRYECRQCGHMEATVRCAQLHDQTHIETDADSKPVKIRPIRMRRKKQTQETQQVKEEAKKLRKLLSKTNSGYKCLYCDMHFEHTRYRKCHMDRYHRERLECDHCQKKFVNRTTLIGHLRLHEGPLPRQECNICHKMVRILQFKYHLKRHESKQTYECKDCDKVFSTLMTYQGHLKYSRAHASEDILKFPCPTCNKGYPTREAMQDHFNYQHLGKTSHKCPICDKPIASKVCIERHLMRVHGEKKEKPKNHICQECGKGFFDKRSLIQHGVIHSLERPLSCDICQQTFKQKATLYTHKKRVHNIIPNKKIVEFINDNTEEAESS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -